Detail information of Asa3G03870


Location
GeneChrStartEndStrand
Asa3G03870chr310615873461061587855+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020264302.14.3e-56nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE33.12.0e-53Transcriptional activator HAP5D
trEMBLA0A5P1EXG63.1e-56CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G63470.172.313e-52 201NF-YC4nuclear factor Y, subunit C4

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Ortholog group
SpeciesGenes
Allium cepag160525.t1
Allium fistulosumAfisC3G04685; AfisC6G05579; AfisC7G01210
Allium sativumAsa0G02969.1; Asa2G03862.1; Asa2G03869.1; Asa2G03871.1; Asa2G03873.1; Asa3G03870.1; Asa8G01674.1
Arabidopsis thalianaAT1G56170.1; AT1G56170.2
Oryza sativaLOC_Os02g07450.1; LOC_Os02g07450.2; LOC_Os06g45640.1; LOC_Os08g38780.1; LOC_Os09g30310.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00808.20CBFD_NFYB_HMFDomain5812175.62.5e-21

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0016602CCCAAT-binding factor complex
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08066NFYC, HAP5; nuclear transcription factor Y, gammaEC:- Antigen processing and presentationko04612

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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