result

Gene information

Detail information of Asa5G02706

Location

Gene	Chr	Start	End	Strand
Asa5G02706	chr5	691209480	691212028	-

Sequences

CDS

Protein

Gene

>Asa5G02706.1
ATGGTGATAAATATGTCAAAGGATCAAGAAACAAGAAAGGGTCCATGGACAGAGCAAGAAGATATGCAGTTAAATTGCTTTGTAAGACTATTTGGCGAACGCCGATGGGATTTCATTGCAAAAGTATCAGGTTTGAGGGGGCGGGAATAATTAGGTAGATAATAAGCTTGAATTGCCAACATATAAGATAAGGTTAAACTGTATCTAACtgcattacattttttatttttccatgtttttatctttatttttcagGTCTTAATAGAAATGGCAAAAGCTGTCGATTGCGTTGGGTTAATTATCTCCATCCAGGTCTCAAGCGTGGTCGCATGACTCCTCAAGAAGAAAGACTTATTCTTGAACTTCATTCTAAATGGGGAAATAGGTTTTATTTATTCTCCTAACTTTCTATTTGTTTCAATTAGTATTATGCATACTGAGTATTACTTGTCACCTACACAAACATGTAGTGGTCGCCCCAATCCATCGGTGTATACCTAGTcgaacatcacaatatatacatacTATTTTGGTAACCACAAGCAAATAACATATCTAGTGATATAAATACATCCGAGCCATGATGATAAATAATTAGTATCTATTTACAGTTTGTGATATCCTATATGGGGGAATAGGTTTGATCTATTTAGTTTTCTAACTTCTTAATTTGTTTGACATTAAGATTATAATATATACTGGAAGAGTTACTTATTACCTATACAAAAACATAGGTGGTCGCGGATTGCGCGTAAACTTCCTGGAAGAACCGATAATGAGATCAAAAACTATTGGAGGACACATATGAGAAAAATAGCACAAGAAAGGAAGAGAGGCTCATTGATCCCAACGACCTCGACTTCATCGAGTTCTCTATCGTCCTCTTTTAACAATGAAGCTTCTGCAAGTAACGTCATAGAAAAATGCACTGAAGAAGTAAAAGTGTACCCTATGGAAcaaatatggaatgaaattgaaGATAACTCCGAGTCTCTTTGGAATTTTGATGTTAGCCAGGAGTTCAACATGATGCCATCTATAGATGACCTTTTGGTATTGGATAACTACCATGGATCGAGAGAGTTTTGGCCTTAGACTTGCACACTAACCATGCTTATTATAGATGAAAAATAATAATCGGTGTCTGGCTGGCTATATACTGTTTGCTTGTATAATTTGGCAAGTTTGTTAAGTGTGCAAGGGGGTGAGAGTTTTATGCCACGAtacaaattttcatgtaatgaacttATGTGAGAACTAGTGTAACATTAGTGactatatatgtgatgtaaattgctgtagtgattatatatgtgatgtaaatTATGGCTTGTTCCTCTGATTGCTCACTGTAGTAGTTTAATCAGTTTTTATGGTAGTTTTAATAAGAAGACAGCTTTCAAAGTTTTTACTGTTTATAGCAAGTGCTGTTTTTGCCAGTATCATTATCAGTAGAGAGCAATGGTGCTTATCTGGATTTGGACGCTGTACTTCTGTTGGAAATGATAAGTGGATATATCATGTGATTTGTGGATGAATAACTATTCTTTCTATGCGCACTTGActtgtaaattccactgcgtagaGAAACCAAAGTGGATATCCTATTTTATCTCATCATTATGCTTTTTTATACTGAGAATTTGTGTGGTTTAGAAAGTGCTTTCATCCAGCTGGACAATGGAGCTTACTTTCCGGCCTAAAAGCAAGGAGATGCACCAATTGGATGGATATGAAACTGTTCATGGCTACCATATGAGGCTTGGATAGATTTAAATCAACCATGGTAACCAACTAGTTAACAACTATCCAATGAAGCTGGGAGGATGAAAACACTTAgcacatcatttttttttttggagtatgtatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatattctgcatctGTAGTagtacaattttaaaatatgtatcaTAATCGTCACTTCGAAAAATTACTCGTACTAAAAACTCATACAAACTAAAAAAATAGAATCTAAAGACGATATTAGTCTACATCTACCCAAAACTTGATACAAGCCAAAAATATAAGTCTCAAGAAAAAGACAGAGTACTCTTCTTCCTAATGAGGGCTAAAACTATGCACCGGAAGAACCTTGTCCAACGACAGATAAACTTGTCAACTTCTTAAATTTCTatgctttcttcttctttcctttgatCTGGTTGACCATATTAATCCATTCAAGGTTGTCAATCACTTCACAGTCTACATCTGCCTAGAAATCGTCAACCGCCTCATCCGATATAGTCCTACGTACTGTCTTCAATCTTATCATAATATGGTCTAAAGTTTTGTTGTCTGCGTTATTGCCATTAGAAGCATCCATATCATTAGCAGTATCTACTGAGTCCATATCATCAGGTTTAGAAGAATTTATTTCACCTCCGTGTGATTCAGGCACTGCTGTCGGATATTTGTATTGTTCTCCTGCTGAACTGTGGAACAATCGATCACTTGAGAAGAAGAGCTTGCAGGGTCTTGCAAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276648.1	5.9e-66	myb-related protein MYBAS2-like isoform X2
Swissprot	Q4JL76.1	2.6e-58	Myb-related protein MYBAS2
trEMBL	A0A5P1EC36	4.3e-66	Transcription factor MYB48

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G46130.1	58.73	1e-57	219	ATMYB48;ATMYB48-1;ATMYB48-2;ATMYB48-3;MYB48	myb domain protein 48

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa5G02706	AT3G46130.1	189	55	2	5	171	1	188	58.73	1e-57	219
Asa5G02706	AT5G59780.3	171	52	3	9	174	6	173	64.91	2e-57	219
Asa5G02706	AT3G46130.3	152	44	2	42	171	8	158	55.92	4e-41	165

Ortholog group

Species	Genes
Allium cepa	g409278.t1; g439695.t1; g54001.t1
Allium fistulosum	AfisC1G03721; AfisC1G05813; AfisC2G03240; AfisC3G04397
Allium sativum	Asa0G05518.1; Asa5G02706.1; Asa5G02707.1; Asa8G00586.1
Arabidopsis thaliana	AT3G46130.1; AT3G46130.2; AT3G46130.3; AT3G46130.4; AT5G59780.1; AT5G59780.2; AT5G59780.3
Oryza sativa	LOC_Os11g47460.1; LOC_Os11g47460.2; LOC_Os11g47460.3; LOC_Os11g47460.4; LOC_Os12g37970.1; LOC_Os12g37970.2; LOC_Os12g37970.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	60	51.9	5.7e-14
PF00249.28	Myb_DNA-binding	Domain	66	110	58.3	5.6e-16

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network