Detail information of Asa6G00931


Location
GeneChrStartEndStrand
Asa6G00931chr6241540793241559314+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008791040.18.4e-225auxin response factor 23-like isoform X2
SwissprotA2ZET6.12.6e-199OsARF1
trEMBLA0A8B7C3P26.1e-225Auxin response factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G62000.147.770.0 696ARF1-BP;ARF2;HSS;ORE14auxin response factor 2

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag129277.t1; g340324.t1; g463433.t1; g85906.t1
Allium fistulosumAfisC2G08481; AfisC3G01342; AfisC3G06139
Allium sativumAsa2G00963.1; Asa2G05051.1; Asa3G04670.1; Asa6G00931.1
Arabidopsis thalianaAT5G62000.1; AT5G62000.2; AT5G62000.3; AT5G62000.4
Oryza sativaLOC_Os01g70270.1; LOC_Os01g70270.2; LOC_Os01g70270.3; LOC_Os01g70270.4; LOC_Os11g32110.1; LOC_Os11g32110.2; LOC_Os11g32110.3; LOC_Os11g32110.4; LOC_Os12g29520.1; LOC_Os12g29520.2; LOC_Os12g29520.3; LOC_Os12g29520.4; LOC_Os12g29520.5

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02362.18B3Family13723875.71.9e-21
PF06507.10Auxin_respFamily263344122.36.5e-36
PF02309.13AUX_IAAFamily55667141.71.1e-10

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity
GO:0009725Presponse to hormone

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14486K14486, ARF; auxin response factorEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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