result

Gene information

Detail information of Asa6G03378

Location

Gene	Chr	Start	End	Strand
Asa6G03378	chr6	883128575	883131462	+

Sequences

CDS

Protein

Gene

>Asa6G03378.1
ATGGGTAACTGCTGCGCATCACCGGTCGATCCTTCTGAGCAGCGCACCCCGAAACACAAAAAACCCAAAAAGCTTAATCCTTTTTCAATCCAATACAACAATACGGCCTCACACCAAAACAAGCTCACCGTATTGAAATCTCCAACCGGAACCGACATCCTGCAACTTTATGACctcggatcggagctagggcgtGGCGAGTTTGGTGTTACCTACTTATGCACCGAGAAAGACACAGGCGATTTGTACGCATGCAAGTCTATTTCGAAAAAGAAGCTTAGGACGTCCATTGATGTTGAGGATGTTAGGAGAGAGGTCGAGATAATGCGATCCATGCCGCCGCATCCGAATATTGTGAAGTTGAAGGACACGTACGAGGATGATAACGCTGTGCATTTGGTTATGGAGCTTTGTGGAGGAGGAGAGTTGTTTGATCGAATTGTTGCGCGAGGGCATTATACAGAGAGGGCGGCAGCTGTTGTAACTAAAACCATTGTTGAGGTTGTTCAGGTAAGGAAATTGTTTTTGATTACATATGTTGAGATCTGAAAGTTCCACAAAGATATATTTTTTGTTATAGCAGATTGCTTTAACCATGAAAAATATTGCAATTTTGTTTTCTAAGGAAATTGGGAGATTATTATTTGCTCTAAATTTGTTATAGATATGCCACAAACATGGCGTGATGCACAGGGATCTGAAGCCTGAAAACTTTTTGTTTGCAAATAAGAAAGAACATGCGGAGCTCAAAGCTATTGACTTTGGTTTATCAGTGTTCTTCAAGCCTGGTATATGTTCTGCCACTTTCGAaaccaaagaaatttaaaataaataaaattttaattagtatATGTTGAATGTAGATTTATTGATGTGTCTATTTTATAACGTAGGTGAGAGATTCACGGAGATTGTAGGCAGTCCTTACTATATGGCACCTGAGGTTTTGAAACGAAATTATGGGCCTGAAGTCGATGTTTGGAGTGCTGGAGTTATATTGTATATTTTGCTTTGTGGCGTTCCACCATTTTGGGCAGGTAGTTTGTCTAATGATATAGAGTCTTAGGTTAGGTAAGTGAAGGAGGTAGAGATTGTCtaagtatttgaatttctattaacAGAAACTGAACAAGGAGTAGCACAGGCGATTATCCGCTCTGTTATAGACTTCAAAAGAGATCCATGGCCTAGGGTTTCTGACAATGCAAAAGATCTTGTGAAGAAGATGCTTGATCCTGATCCCAGGAGGCGATTAACAGCCCAAGAAGTTTTAGGTAATCTATGtaaatattttggtttttcaaTCGCCTGAGACATGCATTTTGGTTAATATGTTTTTGAGTTTGCTCTGGTACTTCATATATGATATTAGTTGCACCATTACTTGTGTTGACTTGCCCAATGTTAATCAACTCTAGACACCATTCCTTTCATACTGAAATAAATATAGTGATTCACAAGACAATTTTAGTACTCTTATACATGTAAAAAAGGCAAATATTAACGTTTCCTTCTCTGTATTGTAATTAACTACTCATAGAATGATTCTGGCTTTGTTTATTCGGTTCTTTTTCCGTCGTTTGGAACCAGAGTCATTATTCCAGTCTAGGAATAACATATGTAAAATCCACTTTGTAACTGAAGTGTGTCAActagtgcatttttcttctttgtattttcagtgtttgaattattttagcaGGTGTCTTTAACCTgcattttttaatttggttctaatgtgtcaataCCATTTCTTTCCATTGCAGACCATCCTTGGTTACAAAATGCTAAAAAGGCACCAAATGTTAATCTTGGAGAGACGGTGAAAGCTAGACTTCAGCAGTTCTCCATGATGAACAAACTCAAAAAGAGAGCTCTCAAGGTATCTGCAGTACACTCTATTTACACacttgctaatatttctatgaATATGTTGTTTCTAAACCTTCTTATTTGCAGGTGATTGCCGAACATTTGTCTGTGGAAGAAGTTGCAGATATTAAGGATATGTTCGCAGCAATGGATGTGGATAATAATGGTAAAATAACATTTGAAGAGCTTAAACTTGGTCTGCAGAAACTTGGTCATCAAATTCCAGAAACGGATGTCAGGATTTTAATGGATGCTGTAAGtaccaaaatttaaatttgaatgctTAAACTTTTGAGTATCATTCCTAGTTCACTTCATCAACTAGAtgttcctttttttccttttatgaaGTTCAGTTAATGTTTTTCAATCCCATTTATGTGGCAAGATGCTCAACGAGATACAATGTTAATGACAGGCTGATGTCGACGGTAACGGAACATTGGATTATGGAGAATTTGTTGCAGTATCTGTGCACCTTAAAAAGATAGGAAACGATGAGCACTTGCACAAAGCCTTCACTTTCTTCGACCAAAATAAGAGTGGATACATCGAGATAGAAGAGCTCAGGGAAGCTTTAGCCGATGATCTAGCACCAAATCAAGAGGAAATTATCACTGCCATCATCCGCGATGTAGATACCAACAAGGTATGTTACCATAACATTATTGCTATTCTTTTTTCTAACCAAACAATTCATTATATCACCTCATATCATCTATATCAACAAGTATTTAGCCTTAAAAAAAATGGTATTTTAGGTCAATATTATATTGACGAAAGTAAAGTTCATGAGACATGAGTGTATAGCTAAAAGGGTgcattaaaacatatttttgtaatatttttatattcaggATGGGAAAATAAGCTACGAAGAGTTTGCAGCGATGATGAAGGCCGGCACAGATTGGAGAAAGGCATCAAGGCAATATTCAAGAGAGCGATTTAACAACCTCAGTCTAAAACTAATGAAGGATGGGTCTTTGCAACTTAAAAACGAGAGCACTAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257982.1	7.5e-272	calcium-dependent protein kinase 20-like isoform X1
Swissprot	Q84SL0.2	5.6e-248	Calcium-dependent protein kinase 20
trEMBL	A0A5P1FFQ9	5.4e-272	Calcium-dependent protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19450.1	77.57	0.0	863	CDPK19;CPK8	calcium-dependent protein kinase 19

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
Asa6G03378	AT5G19450.2	535	115	4	1	532	1	533	77.57	863
Asa6G03378	AT5G19450.1	535	115	4	1	532	1	533	77.57	863
Asa6G03378	AT5G12480.1	537	117	5	1	532	1	535	76.91	858

Ortholog group

Species	Genes
Allium cepa	g190123.t1; g401871.t1; g523691.t1
Allium fistulosum	AfisC2G01288; AfisC2G05010; AfisC2G05810; AfisC3G07720
Allium sativum	Asa2G06390.1; Asa2G06391.1; Asa6G02581.1; Asa6G03377.1; Asa6G03378.1
Arabidopsis thaliana	AT1G18890.1; AT3G57530.1; AT5G12480.1; AT5G19450.1; AT5G19450.2
Oryza sativa	LOC_Os03g48270.1; LOC_Os07g38120.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	57	315	260.2	1.7e-77
PF13833.3	EF-hand_8	Domain	375	425	37.7	1.1e-09
PF13499.3	EF-hand_7	Domain	433	496	51.5	9.4e-14

Gene Ontology

Accession	Ontology	Name
GO:0005509	F	calcium ion binding
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13412	CPK; calcium-dependent protein kinase	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network