result

Gene information

Detail information of Asa6G05404

Location

Gene	Chr	Start	End	Strand
Asa6G05404	chr6	1463695373	1463697589	-

Sequences

CDS

>Asa6G05404.1
ATTTGTTGGCTAAAAGGCAAGAGGAAGCATTGGCTATGTTTTCTGGTCTTGATATTTCATCTGGACAAGAATACAACAGATGGCCTGAAGATCAATCGGTACTTGGTCGAAGAAGGATATATTATGATCGACGCTGCGGTGAAGCTTTAATCTGCAGTGATAGCGAAGAGGATATAGATGATGATGATAAAGAAGAAAAGAAAGAATTTGGAGAAGTTGAAGATTATATTATTCGAAAAACAATCCAAGAGGCTGGCTTGTTTGATAATGTATTTGAGTCGCTGGTCCAGTGCCTAGGTGGGAGTCCTAGTGAAATTAAGGAAAGATATGAGCTATTAATCTCCAGGAAAAACCCAGAAAATTGCACTGAAGAACGTGAAATTGAATCCTGTTTCAAGGATGATAACATTAATCTTGATAAAGACTTAGATGCAGCTCTAAAGTCATTTGATAGCTTTTTTTGCCGTCGTTGTCTAGTTTTCGATTGTAGACTTCATGGACGCTTCCAAAAGCTAGTGTATCCTGTGGAAAAACAACTTCCTCTCAGTTATTCAGTAGATGGCTCACCATGTGGTGCCCGTTGTTACAAGCTGGCTTCAAAGTTAAAAAGCACGACAGTGATAAATTCTCAAACACCTGGTGCTTCTGGAGATCTGACTCCACTGTCGAGTAGTGTTGGTCTCAACTGCTCTCCTAGAAAAAAGAAAACCAAGGGCAGATCTAATCAAAGCGAAGATGGACCCAGAAAAAAGAATAAAAGGTCTGCTGAAAATGCTCTTATAAAGCAAAAGAAAGCTACACCGTCTGATTCAATGGCCAATAGATTTGCAAAGACACGAGAATCAAAACTCAGATCAAATGTATCCAATGATAATTATGATGTCAATTCATCATCTGGAAATAAAAATCTCAGGCCAATAGTTGGGAGGAAATCAAATGACCAGACATCAAAGGAAACATTAGCTACTAAAGTTGATGAATTAGGTAGGAAAGAGTTTGTTGATGAAAACATTTGCCAACCTGAAAATGGGCACAAACTGTGGACGAATTTGGAGAAAAGTCTGTTTGCAAAAGGTATGGAGATTTTTGGGAAGAATAGTTGTTTCATTGCAAGAAATCTTTTGAGTGGGATGAAAACTTGCATGGAAGTTTTTCAATACATAAACTCCTTAGATAAGAGTGGGGCTAATGATGGTTCAGATTATCCCGTTGATAGCAATGACAGGGCTAAAGACATAAAAAGATCGAGGCTTTTAATGAGACGTGGCAGAGTTCGCCGTTTGAAGTACACATGGAAATCTACTAGCTCAATAAGAAAGAGGTTTACTGAGAGAAAAAATCAGACTTGCCGGCAATATAATCCTTGTGGCTGTCAAACTTCATGTGGGAAACAATGTCCTTGCCTTTTGAATGGAACATGCTGTGAAAAATACTGTGGGTGCCCCAAAATATGCAATAATCGATTCCGAGGCTGTTATTGTGCTAAAAGTCAATGTCGAAGCCGTCTATGCCCATGTTTTGCTGCTGACAGAGAATGTGATCCTGATGTTTGTAAAAACTGCTGGATTGGATGTGGAGACGGAACTTTTGGTGGACTTAGGCAAAGAGAAGATGATTACAAATGCAGGAATATGAAGCTTCTTCTAAGACAACAACAAAGTGTCTTACTGGGAAGGTCTGATGTATCTGGCTGGGGTCTTTTTGTTAAGAACAATGTTACTAAAAATGAGTATCTAGGTGAATACACTGGCGAGCTTATCTCTCATAAAGAGGCAGATAAACGTGGAAAGATATACGACCGTGAAAACTCATCCTTCCTTTTCAACCTTAATGATCAGTTCGTTCTGGATGCTTGCCGAAAAGGTAACAAACTGAAATTTGCAAATCACTCGCCGCATCCAAACTGCTACGCAAAGATTATGATGGTGGCAGGAGAACACAGGGTGGGTATGTTTGCAAAAGAGAGGATAAGTGCAGGGGAAGAACTCTTTTTTGATTATAGATACGAAGCCGATACAGCTCCTGCTTGGGCTAGGAAGCCCGATGCAAAGGGTCGAAAAAAATAG

Protein

Gene

>Asa6G05404.1
ATTTGTTGGCTAAAAGGCAAGAGGAAGCATTGGCTATGTTTTCTGGTCTTGATATTTCATCTGGACAAGAATACAACAGTATGAGGGAGGAAAAAAGTTCGGATTCTTCGTCTTTGTTTCTTTTTGGGAATAACACAGCTGGAAGGAATTGTATTCGTCTAATAAAACTTCCTGAAGTTTCTAAACTGCCTCGATATATAACATGGATTTTCTTGGATAAGAATCAAAGGATGGCCTGAAGATCAATCGGTACTTGGTCGAAGAAGGATATATTATGATCGACGCTGCGGTGAAGCTTTAATCTGCAGTGATAGCGAAGAGGATATAGATGATGatgataaagaagaaaagaaagaatttggagaagttgaagattatattattCGAAAAACAATCCAAGAGGCTGGCTTGTTTGATAATGTATTTGAGTCGCTGGTCCAGTGCCTAGGTGGGAGTCCTAGTGAAATTAAGGAAAGATATGAGCTATTAATCTCCAGGAAAAACCCAGAAAATTGCACTGAAGAACGTGAAATTGAATCCTGTTTCAAGGATGATAACATTAATCTTGATAAAGACTTAGATGCAGCTCTAAAGTCATTTGATAGCTTTTTTTGCCGTCGTTGTCTAGTTTTCGATTGTAGACTTCATGGACGCTTCCAAAAGCTAGTGTATCCTGTGGAAAAACAACTTCCTCTCAGTTATTCAGTAGATGGCTCACCATGTGGTGCCCGTTGTTACAAGCTGGCTTCAAAGTTAAAAAGCACGACAGTGATAAATTCTCAAACACCTGGTGCTTCTGGAGATCTGACTCCACTGTCGAGTAGTGTTGGTCTCAACTGCTCTCCTAGAAAAAAGAAAACCAAGGGCAGATCTAATCAAAGCGAAGATGGACCCAGAAAAAAGAATAAAAGGTCTGCTGAAAATGCTCttataaagcaaaagaaagctacaCCGTCTGATTCAATGGCCAATAGATTTGCAAAGACACGAGAATCAAAACTCAGATCAAatgtatccaatgataattatGATGTCAATTCATCATCTGGAAATAAAAATCTCAGGCCAATAGTTGGGAGGAAATCAAATGACCAGACATCAAAGGAAACATTAGCTACTAAAGTTGATGAATTAGGTAGGAAAGAGTTTGTTGATGAAAACATTTGCCAACCTGAAAATGGGCACAAACTGTGGACGAATTTGGAGAAAAGTCTGTTTGCAAAAGGTATGGAGATTTTTGGGAAGAATAGTTGTTTCATTGCAAGAAATCTTTTGAGTGGGATGAAAACTTGCATGGAAGTTTTTCAATACATAAACTCCTTAGATAAGAGTGGGGCTAATGATGGTTCAGATTATCCCGTTGATAGCAATGACAGGGCTAAAGACATAAAAAGATCGAGGCTTTTAATGAGACGTGGCAGAGTTCGCCGTTTGAAGTACACATGGAAATCTACTAGCTCAATAAGAAAGAGGTTTACTGAGAGAAAAAATCAGACTTGCCGGCAATATAATCCTTGTGGCTGTCAAACTTCATGTGGGAAACAATGTCCTTGCCTTTTGAATGGAACATGCTGTGAAAAATACTGTGGGTGCCCCAAAATATGCAATAATCGATTCCGAGGCTGTTATTGTGCTAAAAGTCAATGTCGAAGCCGTCTATGCCCATGTTTTGCTGCTGACAGAGAATGTGATCCTGATGTTTGTAAAAACTGCTGGATTGGATGTGGAGACGGAACTTTTGGTGGACTTAGGCAAAGAGAAGATGATTACAAATGCAGGAATATGAAGCTTCTTCTAAGACAACAACAAAGTGTCTTACTGGGAAGGTCTGATGTATCTGGCTGGGGTCTTTTtgttaagaacaatgttactaaaAATGAGTATCTAGGTGAATACACTGGCGAGCTTATCTCTCATAAAGAGGCAGATAAACGTGGAAAGATATACGACCGTGAAAACTCATCCTTCCTTTTCAACCTTAATGATCAGTTCGTTCTGGATGCTTGCCGAAAAGGTAACAAACTGAAATTTGCAAATCACTCGCCGCATCCAAACTGCTACGCAAAGATTATGATGGTGGCAGGAGAACACAGGGTGGGTATGTTTGCAAAAGAGAGGATAAGTGCAGGGGAAGAACTCTTTTTTGATTATAGATACGAAGCCGATACAGCTCCTGCTTGGGCTAGGAAGCCCGATGCAAAGGGTCGAAAAAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240981.1	1.1e-203	histone-lysine N-methyltransferase EZ1
Swissprot	Q5VN06.1	1.4e-163	SET family protein 24
trEMBL	A0A8B9ANT9	5.0e-185	histone-lysine N-methyltransferase CLF-like isoform X3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G23380.1	52.61	0.0	654	CLF;ICU1;SDG1;SET1	SET domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa6G05404	AT2G23380.1	747	254	18	26	687	156	887	52.61	0.0	654
Asa6G05404	AT4G02020.1	709	304	15	26	682	144	837	47.67	2e-164	576
Asa6G05404	AT1G02580.1	352	165	6	333	678	329	669	48.30	5e-96	349

Ortholog group

Species	Genes
Allium cepa	g186011.t1
Allium fistulosum	AfisC2G02252
Allium sativum	Asa4G02930.1; Asa6G05404.1
Arabidopsis thaliana	AT2G23380.1
Oryza sativa	LOC_Os06g16390.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00856.25	SET	Family	563	666	49.9	4.1e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003682	F	chromatin binding
GO:0031519	C	PcG protein complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11430	EZH2; [histone H3]-lysine27 N-trimethyltransferase EZH2	EC:2.1.1.356	Lysine degradation	ko00310

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network