Detail information of Asa7G01587


Location
GeneChrStartEndStrand
Asa7G01587chr7433214463433227457+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020245416.17.0e-131protein LHY-like isoform X1
SwissprotQ6R0H1.27.6e-82Protein LATE ELONGATED HYPOCOTYL
trEMBLA0A6I9SDF15.7e-119protein LHY-like isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G46830.139.651e-78 291AtCCA1;CCA1circadian clock associated 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag412059.t1; g61981.t1
Allium fistulosumAfisC2G00978
Allium sativumAsa3G03443.1; Asa7G01587.1
Arabidopsis thalianaAT1G01060.1; AT1G01060.2; AT1G01060.3; AT1G01060.4; AT1G01060.5
Oryza sativaLOC_Os08g06110.2; LOC_Os08g06110.3; LOC_Os08g06110.4; LOC_Os08g06110.5

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain246751.01e-13

Gene Ontology
AccessionOntologyName
GO:0003682Fchromatin binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K12133LHY; MYB-related transcription factor LHYEC:- Circadian rhythm - plantko04712

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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