result

Gene information

Detail information of Asa7G06343

Location

Gene	Chr	Start	End	Strand
Asa7G06343	chr7	1743687029	1743688829	-

Sequences

CDS

>Asa7G06343.1
ATGTTGGTAAACCTAGGAAAAAAAAGAGGAATTGGTATGCCCATGCATGATACCAAACAAGGTGAAGATGATAATGATGGTTATGAGCCATATAGTTGGAAACGCTCAATCCTGTCATGGATGATAGATACAGGAGTTATAAAAGTTGATGGAGAAGTGAATTACATGAACAAGGAGAAAAGTCAAGCTTTACTAGAGGGTTCTGTAAAAAGAGATGGAATTCTCTGTGGTTGCTGCAATGAAACTGTTTGTGTATCAACTTTTGAGATTCATGCTGGCAGTAAACTAAATCAACCATATGAAAATATTGTGTTGGAAAAGAAGGGAGTCTCTTTGCTTGATTGTCAATGCGAGAAAAAATATCATTCCAAGTGCATTCCATGTGAAGAATCAATCACAGTTACTTCCAATGATTCAGATGTTCCATTTTGTGGAAAGAGTTGCAAAAAGGTCTTCGAGCAGTTGCAGAAATACATTGGGACAAAAAATGAAATGGAATCAGGTTTATCGTGGTCAGTTTATCGTCGTTTTCGAGATTATTCATCTGAACATGATTTAAGCATGCCTAAGAAGGTCGAAATCAACTCAAAGATTGATGTTGCTCTTACGGTAATGGATGAATGCTTCTATCCTTTTATAGATCACAGAACTGGTGTTAATCTGATCCATAATGTTGTTTACAACCGTGGGTCCAATATTCCCCGAATAAGTTACTCTGGCTTTTATACTTTTGTCTTGGAACGAGGGGATGAGATCGTTGATGTAGCATCTATTAGAGTCCATGGTACCAGGTTAGCAGAAATGCCTTTTATTGGGACAAGGTACATATATAGTCGTAAAGGGATGTGCCGTCAACTACTTAATGGAATTGAGTTGGCACTCTGCTCCCTTAATATTGAAAAACTAATGATACCTGCAATACCAAAATTAACAGAAACTTGGACCGGTAGTTTTGGCTTTAATCCTCTCACTCATTTGGAAAGACAAGAGGTCAAATCCACTACAATATTAGTTTTCAATGGTACTGGTCTTTTGCATAAACCACTCATCAGTAAAAGTCCATCAAATGGAAATTCAAGTCTTATTGGCGATGATCAAAGTGAGCATGTTGGAAAGACGAGCTCATCAAATAGTGATCCAAGTCTTATTAACAATATTAAGATGCTTCCCAAGTTAGACGATCAAAATGAACACGATGAAAAAAGGGTTAATGAGAATACTTGCAATGCCCCTAATACAAATTCTAAGCATGAAGCAAAATTTGACAAGGGAAGCATGATGGAGATTAGTGCTACAAAATTGTCTGAAGCTATAACCAAAGTCATCCCTGATCTAAATATCCCTTTTGATTCAGATAACATGGTGAAGAACTCTAATGGCAAGGCTCCTCCTGCGCACGAAGAATTCTACTGTAATGATGAGCCTCTTTCTCAAACATTGTCAGCTTAA

Protein

Gene

>Asa7G06343.1
ATGTTGGTAAACCTAGGAAAAAAAAGAGGAATTGGTATGCCCATGCATGATACCAAACAAGGTGAAGATGATAATGATGGTTATGAGCCATATAGTTGGAAACGCTCAATCCTGTCATGGATGATAGATACAGGAGTTATAAAAGTTGATGGAGAAGTGAATTACATGAACAAGGAGAAAAGTCAAGCTTTACTAGAGGGTTCTGTAAAAAGAGATGGAATTCTCTGTGGTTGCTGCAATGAAACTGTTTGTGTATCAACTTTTGAGATTCATGCTGGCAGTAAACTAAATCAACCATATGAAAATATTGTGTTGGAAAAGAAGGGAGTCTCTTTGCTTGATTGTCAAGTAAAAGCATGGGGAAAACAAAAAAAGCATTAGAAAAACAAGAATTTTTTGAAGTAGATATTAGTGGAGATGATAATAGTGATGACACTTGTTGTATTTGTGGAGACGGAGCTGACTTGGTTTGTTGCGATGGATGCCCCTCTACTTTCCATTTGAATTGCTTGGACATGGAGATACTTCCTTCTGGTTATTGGTAATGTACAAATTGTTCATGAAAATACTGTAACTCAGTTTCTACTGTCGATTTGAAAGAAGACGATCCAGTTATTTCTATGTTGCTCACATGTTTCTAGTGCGAGAAAAAATATCATTCCAAGTGCATTCCATGTGAAGAATCAATCACAGTTACTTCCAATGATTCAGATGTTCCATTTTGTGGAAAGAGTTGCAAAAAGGTCTTCGAGCAGTTGCAGAAATACATTGGGACAAAAAATGAAATGGAATCAGGTTTATCGTGGTCAGTTTATCGTCGTTTTCGAGATTATTCATCTGAACATGATTTAAGCATGCCTAAGAAGGTCGAAATCAACTCAAAGATTGATGTTGCTCTTACGGTAATGGATGAATGCTTCTATCCTTTTATAGATCACAGAACTGGTGTTAATCTGATCCATAATGTTGTTTACAACCGTGGGTCCAATATTCCCCGAATAAGTTACTCTGGCTTTTATACTTTTGTCTTGGAACGAGGGGATGAGATCGTTGATGTAGCATCTATTAGAGTCCATGGTACCAGGTTAGCAGAAATGCCTTTTATTGGGACAAGGTACATATATAGTCGTAAAGGGATGTGCCGTCAACTACTTAATGGAATTGAGTTGGCACTCTGCTCCCTTAATATTGAAAAACTAATGATACCTGCAATACCAAAATTAACAGAAACTTGGACCGGTAGTTTTGGCTTTAATCCTCTCACTCATTTGGAAAGACAAGAGGTCAAATCCACTACAATATTAGTTTTCAATGGTACTGGTCTTTTGCATAAACCACTCATCAGTAAAAGTCCATCAAATGGAAATTCAAGTCTTATTGGCGATGATCAAAGTGAGCATGTTGGAAAGACGGTTAATGTGTGCACGTGCTATGATCCTGAAACAAATTCTAAGAAGTCAGTGATGATTAGAGCTCATCAAATAGTGATCCAAGTCTTATTAACAATATTAAGATGCTTCCCAAGTTAGACGATCAAAATGAACACGATGAAAAAAGGGTTAATGAGAATACTTGCAATGCCCCTAATACAAATTCTAAGCATGAAGCAAAATTTGACAAGGGAAGCATGATGGAGATTAGTGCTACAAAATTGTCTGAAGCTATAACCAAAGTCATCCCTGATCTAAATATCCCTTTTGATTCAGATAACATGGTGAAGAACTCTAATGGCAAGGCTCCTCCTGCGCACGAAGAATTCTACTGTAATGATGAGCCTCTTTCTCAAACATTGTCAGCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256079.1	1.9e-120	uncharacterized protein LOC109832971 isoform X1
Swissprot	F4IXE7.1	4.0e-51	Repressor of silencing 4
trEMBL	A0A4S8KFA6	7.9e-105	PHD-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G05380.1	48.53	1e-73	274		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa7G06343	AT1G05380.2	272	134	3	110	376	686	956	48.53	1e-73	274
Asa7G06343	AT1G05380.2	91	44	1	26	116	509	598	50.55	5e-23	105
Asa7G06343	AT1G05380.1	272	134	3	110	376	686	956	48.53	1e-73	274

Ortholog group

Species	Genes
Allium cepa	g137475.t1; g223673.t1; g493194.t1
Allium fistulosum	AfisC2G06783; AfisC7G00016; AfisC8G00984
Allium sativum	Asa0G02890.1; Asa1G04050.1; Asa3G04862.1; Asa3G04865.1; Asa7G06343.1
Arabidopsis thaliana	AT1G05380.1; AT1G05380.2; AT4G14920.1
Oryza sativa	LOC_Os03g53630.1; LOC_Os07g07690.1; LOC_Os07g07690.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF16135.2	Jas	Family	31	104	79.1	1.9e-22

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02964	RP-S18e, RPS18; small subunit ribosomal protein S18e	EC:-	Ribosome	ko03010

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network