Detail information of Asa8G02254


Location
GeneChrStartEndStrand
Asa8G02254chr8628938662628939177+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAGV31153.14.0e-57C-class MADS-box protein
SwissprotQ93XH4.13.6e-47MADS-box protein 1
trEMBLT2CD952.9e-57C-class MADS-box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G18960.163.069e-52 199AGK-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag26966.t1; g90830.t1
Allium fistulosumAfisC2G04165; AfisC2G04172; AfisC3G08718
Allium sativumAsa2G01007.1; Asa8G02254.1
Arabidopsis thalianaAT4G18960.1; AT4G18960.2
Oryza sativaLOC_Os01g10504.1; LOC_Os01g10504.2; LOC_Os01g10504.3; LOC_Os05g11414.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105770.55.3e-20
PF01486.14K-boxFamily8715968.73.3e-19

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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