result

Gene information

Detail information of Asa8G02990

Location

Gene	Chr	Start	End	Strand
Asa8G02990	chr8	812971964	812973262	+

Sequences

CDS

>Asa8G02990.1
ATGCAGGATATCCTCTCGATAAGTCTTCTTCAGACGATGAATGCATCTCCTCCTCCTCCTTATGTGCCGTGTCGCGTAGTTTCTCGAAAGCGCATGGCTGACCCAGAAAGCGATGAGGTTTTTGCCAAAATTGGCCTTGTCCCCATAAGACAAAATCCTGAATTATTGGACTGTTCAATGAAAGAAGAAATCATGGAGGATGCTTATTCGATAGAGGAGGAAGTAGTGGTAAATTCAGTGACATTCGCAAAGACTTTGACTCCGTCTGATGCAGACAATTCAAGCAGCTTTACAGTGCCTCGACAATGTGCAGAAAGAATATTTCCAAAGCTGGATTCTAAACAAGAACCACCGACTCAATTTATAAATTGCAGGGATGTGCATGGAAATACATGGAGTTTCAGACAGGTGTTCAGGGGGTCGCCTAAACGTCATTTGTTGAATGGAGGCTGGAGCAAGTTTGTGGTTAGCAAGAAGCTTGAGGCTGGAGACGTTATTGTGTTTTTGAGGAAGGAGAGCGGGGAAGTTCATGTGGGCATAAGGAGGTCGATGAAGGAAGGGGCAAAGCTTAAGAGTAGAATTAAGATAAGGAAGGAGGCAGTGATAGAGAGCATAACGAAGGCATGTGAAGGAGAGGCTTTTGAAGTAGAGTACTATCCAAGGGCTGCAGGCGGCAGCACGCTTGAATACTGGGTGAAGGCATCACAAGCGGTAGCAACAACAAAGATAGCATGGCGCCCTGGAATGAGGGTCAAAATGGCAGCCGAGTCCGAGGATCAGCTGAGGATTAATTGGTTCATGGGAACAATTGTACTATTCAAGAATCATTGGAAGAAGTTGCAATGGAGACAACTTGAGGTGACATGGGACAATGCTGCAACAGAAAGACGGCTTGAAGATTTGAAGCGAGTGAACCCGTGGATGGTTGAACCAGTTTCAACCATATTGCCCATGTTGCCCGATCTCCATACAGCAGTCAGAATAAGCAGCTGCTTGCCTCCTTATGATTTTTTGTCTAATTCTGCATGTCCTCCTTTGAATGTCTCCTCTGACCACCAATTTCAGTTGCCTTCACCGCGACTACTTCCTCTTCTCTCACTAGGCGTACAGGGATCCAGGCATAATGATCATAGCTCTCCAAATTTTCATTTTAAGGACGATGACGCTGGTAGGAATGACGCAGCTTGTGTTTTAACTATTGGCCAGTATTCTCATGCACCTGCAACTTCACCTCCTCCTCCCACTACTGCTGCCACGTTTAGGCTGTTTGGCAAGACAGTGTATGGTCGTCAAGGCTGA

Protein

Gene

>Asa8G02990.1
ATGCAGGATATCCTCTCGATAAGTCTTCTTCAGACGATGAAtgcatctcctcctcctccttatgTGCCGTGTCGCGTAGTTTCTCGAAAGCGCATGGCTGACCCAGAAAGCGATGAGGTTTTTGCCAAAATTGGCCTTGTCCCCATAAGACAAAATCCTGAATTATTGGACTGTTCAATGAAAGAAGAAATCATGGAGGATGCTTATTCGATAGAGGAGGAAGTAGTGGTAAATTCAGTGACATTCGCAAAGACTTTGACTCCGTCTGATGCAGACAATTCAAGCAGCTTTACAGTGCCTCGACAATGTGCAGAAAGAATATTTCCAAAGCTGGATTCTAAACAAGAACCACCGACTCAATTTATAAATTGCAGGGATGTGCATGGAAATACATGGAGTTTCAGACAGGTGTTCAGGGGGTCGCCTAAACGTCATTTGTTGAATGGAGGCTGGAGCAAGTTTGTGGTTAGCAAGAAGCTTGAGGCTGGAGACGTTATTGTGTTTTTGAGGAAGGAGAGCGGGGAAGTTCATGTGGGCATAAGGAGGTCGATGAAGGAAGGGGCAAAGCTTAAGAGTAGAATTAAGATAAGGAAGGAGGCAGTGATAGAGAGCATAACGAAGGCATGTGAAGGAGAGGCTTTTGAAGTAGAGTACTATCCAAGGGCTGCAGGCGGCAGCACGCTTGAATACTGGGTGAAGGCATCACAAGCGGTAGCAACAACAAAGATAGCATGGCGCCCTGGAATGAGGGTCAAAATGGCAGCCGAGTCCGAGGATCAGCTGAGGATTAATTGGTTCATGGGAACAATTGTACTATTCAAGAATCATTGGAAGAAGTTGCAATGGAGACAACTTGAGGTGACATGGGACAATGCTGCAACAGAAAGACGGCTTGAAGATTTGAAGCGAGTGAACCCGTGGATGGTTGAACCAGTTTCAACCATATTGCCCATGTTGCCCGATCTCCATACAGCAGTCAGAATAAGCAGCTGCTTGCCTCCTTATGATTTTTTGTCTAATTCTGCATGTCCTCCTTTGAATGTCTCCTCTGACCACCAATTTCAGTTGCCTTCACCGCGACTACTTCCTCTTCTCTCACTAGGCGTACAGGGATCCAGGCATAATGATCATAgctctccaaattttcattttaaggACGATGACGCTGGTAGGAATGACGCAGCTTGTGTTTTAACTATTGGCCAGTATTCTCATGCACCTGCAACTTCACCTCCTCCTCCCACTACTGCTGCCACGTTTAGGCTGTTTGGCAAGACAGTGTATGGTCGTCAAGGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PPE00942.1	1.2e-70	hypothetical protein GOBAR_DD02023
Swissprot	Q01I35.2	7.7e-70	Auxin response factor 10
trEMBL	A0A5D2L814	8.8e-71	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	41.35	2e-73	273	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa8G02990	AT4G30080.1	416	185	9	17	383	59	464	41.35	2e-73	273
Asa8G02990	AT2G28350.1	349	152	6	19	323	52	390	40.97	6e-64	241
Asa8G02990	AT1G77850.1	424	195	13	9	381	52	453	36.79	1e-61	233

Ortholog group

Species	Genes
Allium cepa	g181190.t1; g181226.t1; g181239.t1; g181244.t1; g181247.t1; g208584.t1; g403994.t1
Allium fistulosum	AfisC6G04104
Allium sativum	Asa8G02969.1; Asa8G02990.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	82	183	72.7	1.7e-20
PF06507.10	Auxin_resp	Family	208	285	51.6	7.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009725	P	response to hormone

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network