result

Gene information

Detail information of g123933

Location

Gene	Chr	Start	End	Strand
g123933	Scaffold_40998:HRSCAF_424084	393036	394247	-

Sequences

CDS

>g123933.t1
ATGACTTACTGGACCAGGGGCCCACTTCTCGGCCGCGGCTCGACCGCAATCGTCTCCCTCGCTTCCGATCTCAACTCCGGCCAACTCTTCGCCGTTAAATCAACAACTCACTCCCACTCCGAATTCCTTCAGTATGAAAAGAGCATTCATTCTTCAATCTCTTCTCCTCACATAATCTCTTACTTAGGCGACGATTCAGATGATCAATTCTACAATCTCTTTCTCGAGTATGCCTCCGGTGGATCCATCTCCGATCTCATCCAAAAACAAAAGCTTCACGAATCCGAAATCAGATCTTTCGTAAAAGACATTCTGCTTGGATTGAGACATCTCCATTCCATGAAAATTGCCCACTGCGACATTAAATGCCAGAACATTCTGATCTGCTGCGATGGGAAAACAAAAATCGCAGATTTAGGTTGCGCGAAATACATCGGTTCTGATAATCAAATCAGGGCTAAAATCAGGGGAACCCCGATGTTCATGGCGCCAGAGGTGGCCAGAGGCGAAGAACAAGGACTGGCGTCTGATGTTTGGGCGCTCGGGTGCTCGATTATTGAAATGGCCACAGGCAGAGCTCCATGGTCCAATGTTTCGGATGCGGGTTCCCTTCTTTATCGGGTCGGCTTCACAGATGATGTGCCTGAAATTCCTGAATGGATTTCGGATTCTGGTAAGGACTTTTTGAGCAAGTGTTTGGTGAAGGATGCTGGTAAGAGGTCTACTGTTGACGAGTTGTTGATGCATCCTTTCTTCACGGGTACAGGTTTGGATAATGAGTACAAGCGGATTACGCCAAAGAGTATACTGGACAATAGCGTATGGGATTCGGTATCAGAAAGTGAAGCAGTTGCGGGTTCCGGATCCAACAGAATAATGGATTTGATTGGATTTGGTGATGGACCCGATTGGAGCTGGAATGACAGTTGGCAAACGGTACGCAATGAACCACTGTTTACCAGTGTCAGTGTTGTTGCTAGTACAAGCAACGAATTATCTGAGGTTGCTTTCGATGGTGAATTATGTGATTATAGTGAAGTTAATTACATGTATGAATCCGGTGAAGAAGATGTGCTTCTTTCTGAAAATTGTACTGGTGATGATGATGGTACAGAATTGATATCAATTGCTAGTAATGATATATTTAATCCGGTTGAAACTGATTTTTCTATCTATATGTTAATTATTTGCAGTTTACAGAGTGTCATTTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926215.1	1.4e-84	mitogen-activated protein kinase kinase kinase 18
Swissprot	O80888.1	2.2e-63	Mitogen-activated protein kinase kinase kinase 17
trEMBL	A0A8K0MWL9	2.8e-87	Mitogen-activated protein kinase kinase kinase 18

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G55090.1	49.31	1e-73	273	MAPKKK15	mitogen-activated protein kinase kinase kinase 15

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g123933	AT5G55090.1	288	123	7	4	276	6	285	49.31	1e-73	273
g123933	AT4G26890.1	293	129	6	4	283	5	289	48.81	3e-73	272
g123933	AT2G32510.1	291	141	6	4	278	3	290	45.02	3e-67	252

Ortholog group

Species	Genes
Allium cepa	g101987.t1; g123933.t1; g123940.t1; g123955.t1; g501304.t1
Allium fistulosum	AfisC3G08816; AfisC3G08820; AfisC3G08821; AfisC3G08824; AfisC3G08826; AfisC3G08827; AfisC6G00245
Allium sativum	Asa0G03825.1; Asa2G03244.1; Asa2G07284.1; Asa2G07285.1; Asa2G07286.1; Asa2G07291.1; Asa2G07296.1; Asa2G07297.1; Asa2G07299.1; Asa2G07316.1; Asa8G05772.1
Arabidopsis thaliana	AT1G05100.1; AT4G26890.1
Oryza sativa	LOC_Os01g50370.1; LOC_Os01g50400.1; LOC_Os01g50410.1; LOC_Os02g21700.1; LOC_Os05g46760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	7	252	183.2	5.2e-54

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20716	MAPKKK17_18; mitogen-activated protein kinase kinase kinase 17/18	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network