result

Gene information

Detail information of g127554

Location

Gene	Chr	Start	End	Strand
g127554	CHR3	94833750	94835969	+

Sequences

CDS

Protein

Gene

>g127554.t1
ATGAATATGAATCAGACTGCAAAAGCAGTAAGTGGAAAGACTGCACGTGCCTGCAATGGATGTCTGAGAAGGCGTGCGAGGTGGTACTGCGCTGCAGACGATGCCTTCCTGTGTCAGTCCTGCGATCAGTCTGTTCACTCCGCTAACCTGCTTGCAAGCAGACACGAGAGGGTTAGGCTGAAGACCGCATCGTCTTGTGATGACAGTTTGCCAAGCTGGCATCAGGGGTTTAAGAGAAAAGCACGGACACCAAGACGCCATGCAAAGAGTTCCGCTGCAATGAAGCCAGCAGTTCAAGTGCCGGACATGGAAATGTTAGCCGAAGAGGAGAGTGCAGTGAGTGATATCATGAATGAGGAAGGACAGGAGAGGCTTTTGTACCAGGTGCCTGTGTTCGAACCTATATTTGATGATATGAAGTTGAAGGATGTACGTAGTAATGATATTGGAGGATATGATCCGACTGATATTGAACTAGCAGAGTTTGCTGCTGATGTGGAGATTATGCTAGGTCAAGGGCTGGATGACATTGATGCTTTTGGGATTGATGTTTTAGGGTTACTGGAAGCAGAAGAAGATCAAAGTAAAGCAAAAGTTGAACTCGTGGATGGAACTGGTGACTACTATGGTAATGATACAACAAATTTTGGGTTTGATGTAGAAATGGAGATTTCGAGAGGGTCGCTCGATGTTAATTTTGATTGTGAGGCTGAGGAGCAGAAGGTGGAGACAGAAGAGAGAGATATGTCGATGGGTATAGGTTTAAAGATTGACTATGAGTCGGTAATCAATGCGTGGTCGTGTCAAGGCACTTCCCCATGGACTGATGGAGTTCGACCACAGTTCAGTGCGGATGATTGCTGGTTAAACATAATGGTAAGAATATCTTAATCTTGTGTTACAACATAAAATAGTAGTCTAAACCTCTATATCTGACTATGCCAGCAGTACAAATTATGGACTTCATAACAATTTTCATACTGCATATAATTTATAAGTTGATAAAAACAATTCATAACTCAAGGTGCAGTTGAACATATTTCTTTTTCTCAACATAGGGTACAGTTGAACAAGTTTTTCTTTCTCAAAATAAATAATAAAATGGCTCATAATGCCAAGGACCCATTAGGACAATGGTAAGCCTCTAACTCGTGGATTAAGATATCCTAGCATTCAATTTTCAATTTTCAAAAGAAGGGGAAAAAATAAATAGTAACCAAGATTCATAATTTTACTTGAATTATATGCACATCTCTTGCCTAGGTTTTCAAACGTAAATCAAAAAGTTTAAGATTGAAATCGGCACTGGAATTAAGTCATGTTTAGTGGATTTACCGAATCATATTTCGATGATTATTCAAGTTTATAAGCTAGAAGTGCTCGTTTGTATATTATCAAATCACACTTATATGTATTAAAACGTTGATTATTCTTTTTCTAGTGATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCGAAATTATAAATTATATTTTGAAATTGATTTTGATGCTTATGCATCTCATCTAAACCTAAAACTTCAGTCTTTGTTTTGTCTTTATCTTATTTTATTTTTAAAAATAATGAAAATTTAATTGTAGGTATAAATAAGTATCTCTTTTTTTTTGGCATGAACATATAGTTTTTTCAATTGCCATTTCAATTGAGTTTTGAATTGTAAGTTCAAATTGAATCATAATAGAAGAGATTCAATCGTAAATGGAATTCAAATCGTAATATCTTATGATTTTTATGACAATGTCTCACATCATCCAATCTCCAATTAGTTATCTTAAAGTTGTAGGGCCATAATATTTATAAAAAAAAATGATACCTTATAGTTTTTCATTAGGGAGTGCTTTATCACACTCACATAACATTTGTGTTTTTACCATGGTACACTGTAACACTGAAAACCTCTGGTTCAATTTCTCATTGATATTTATGGTAATATGGTATATAGGGCATGTGGGGAACACCAATGGGAGGAGAAATGCAAGGAGCAAGTTATGGGTGTGGAAGTGGGCAAGTTGGTAATTTTGATGGAGGAAGAGAGGCTAGAGTCTCAAGGTATCGAGAGAAGAGAAGGACAAGGCTATTTTCAAAGAGAATCAGGTACGAAGTGAGGAAGCTTAATGCAGAAAAGAGGCCAAGGATGAAGGGGAGGTTTGTCAAAAGAACAGCAATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAF5187386.1	8.2e-76	Zinc finger protein constans-like
Swissprot	Q8RWD0.2	3.5e-63	Zinc finger protein CONSTANS-LIKE 16
trEMBL	A0A8K0MYW3	8.8e-80	Zinc finger protein CONSTANS-LIKE 16

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25440.1	42.62	1e-71	266	BBX15	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g127554	AT1G25440.1	413	175	10	3	364	2	403	42.62	1e-71	266
g127554	AT1G68520.1	417	170	14	3	367	2	402	42.93	3e-68	255
g127554	AT1G73870.1	399	205	16	1	367	3	390	37.84	7e-55	211

Ortholog group

Species	Genes
Allium cepa	g106481.t1; g127554.t1; g335631.t1
Allium fistulosum	AfisC3G00856; AfisC3G05466; AfisC3G05750; AfisC6G02539; AfisC8G00883
Allium sativum	Asa2G00770.1; Asa2G06674.1
Arabidopsis thaliana	AT1G25440.1; AT1G68520.1
Oryza sativa	LOC_Os02g49880.1; LOC_Os03g50310.1; LOC_Os06g15330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	15	58	29.6	5.2e-07
PF06203.11	CCT	Motif	322	364	63.1	1.7e-17

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network