result

Gene information

Detail information of g135041

Location

Gene	Chr	Start	End	Strand
g135041	Scaffold_42388:HRSCAF_425474	490616	494921	+

Sequences

CDS

Protein

Gene

>g135041.t1
ATGACGTTCTCCTCCTTGTCATCACACGCACCTACGATTCCATATTTCCTACCAAAATCGCAGCCGCTCATCTCGGACGTGAATGCGAGAGCTCTTCCCCCAATGATCACCTCAGCTAGGTTGTGCCTCCACGCACAGCTACTTGCTATTTTCTTTAGCATTCGATCGCGGTTTTATTTTGATGAATTAGGGCTCAAGAATTCACTACAGGATGCGGGCTTGTTTTTGATGCAAGGAAAGGAAAGAGGATTCCAGAAAAAGTGGGAAAGTGGTAAATTTTAAATGGGCTTGGGGCTTGGAATGGACTTTAGTTTTAATTAACTAATTATTCTTTTCTTTTCTTTTAATAACTCTTTTAACTTAATTGCAATTAAATTTCTATTTAAGTTAATTTACACTTATTCTGCTCAATATATTTTGATAACCGTCCAAATTCATTCAATTTGATGTCTACTTATTAATTTTGTGCTATTTAATCACAAACAATTATTTACACTTATAAAAATATTTTGTATTCAATTTAAAATATTTTATTCAATTCGATAAATTATTCGAAAAGATTTTATTAGTTTATTTCAATTTATTAAATTAAAATTTTATATTAAATAGGATTAAATTAACTAATTTTTTTTCAATTTTTTTTTATCAAATATCAGATTCAAATAAATTTAATTTTAACTAAATTTATTTATTATTACAACGTAGGAAGTAGAATTGTTACAAAAACCGTGTAATTTTTTCATACAATTAACATATACGATCACACGATTAAGAAGTATCATTGGACAATGTTTTAGTATATTAAAGAAAAAATTTCTCATTTTGTTTAAGATATCTCCATACAAATTTCAGAAAGAGATATCATTACACTCGATAAAGTTATTTTTGGAAACTGTGCAAGAAGAAAAAATACTGCAAATGTTTACGAAGAAACAAACAATGAAATTGATAATCGAGAACCACCCAGACTCCACCAAATCACGGTGAAGTGATTTCATCTAAATTACAAGCTTTTATGGTAAATTTGCATGATCAAATTGTCGACCAATAAGTTATTACAATAAACAAGTGAAAATTTGTTTTCAATTTCCTTCATAAGGTCATTGAATATATTTTTCATTTTTCATTTTTCATTTGTAATAACACATTATATGTATATTCATAGTATTATTCAAATGATAAAAGTATTAACAATGAAAGGTCAAACAATAAGTTATTACAATAAAACATGTTTATAATCAGCAATCAAATCAATCAAACAACGTATCAAACATTCACCATTAGAGCTTCAACGTTCAGCTTTTAGCATTGAGTAGTGTTATGAAAATTGTTTTCTCGTTAACACACCAAAGCAATGATGTTAAATTTGCAAGGGGTACATTCCATTGGAATTCACAAAGAATATTCATCCTCAAAGTTGCAGGCATAGCATAAAAATAATATGGCATATATAGTCAGCATCAAAACAACCTAAAATACATCTAGTTGACTTGATAAACATGACGCTGATGTAAGAAAAAAACAGCAGCAAACTTCCAAATAAACCTCAGTACTGGTTCAAAAATATATACACAAATTAAGCAGTCACAAAGATGGAGCTCATAACTGATCAACCAACACAATAATGGAGAGTCGAAATGAGAAAATTTACGTGTCTGTGAGCAGAAATATCGAAGGAGCCGAAAAGATCCTGAAGTGGGCATATAGTCGATGGAGCAGTCAATCAGTCTCCTTTGTCATCCTTCATATAAACACTAATACCTTGGATTATGTACAAACTCCTTGTAAGTTGCAGCTGCGTAATCTTTAACCATTTTTTCATGAAATCTTAACGTTAATGTTAATATGCAAACCCTCTAAAGGAAATATACATGTGTAACTACTAGCTACTAAATTTAGTTGAATTTTTAGTTGGAAAGTTTCCATCTAGTTCGCTAAATGATGTAATGTTGGAAGACTACAAGGCTAAAGAAAACGAGGAAGTGGACAACCTCCTGCGCAAATATACATCTTTAAACTCCCAGGTATGTATTTATTTATAATAGCTGGGTTTTTTTTTTTCATTAGATTGATTTAAGGGCTTTTTCAATTTGCAGGTGAGAGTAGAGTTATTAAAAGTTGATGCATCTGATGGCTATGTCCCTAAAATTATTGTTAGCTTGATCGAAAGTCTTGGAATCAAGAAGTTGGTTATGGGATTCAAAAACACAAAATCAGCATCCTGGTAATTAGATAATACACCTAATTTTCTAGCCTTGTTCCTTTTTCATGTAACAATTTGATATATAATAAACATGTAGGAAGGCAAAATGTAAGAATATTAACTCTTGCTACGTACAAAAGCACAAGCCAAGCTTTTGCGAACTATTTATTGTATGCGGTGGACAACTAGTTTTATTCAAAGAAGATAATTTGGATGAAGGCTTTTCCTTCGTCCAAGAAAATGGAGCCATAGTTGCAGATTTTAGAAAGAAATCCAAAGAAAAAGGAAGTTTCAAAACGTGGTGGAGTAGAAAATCCATGGATACTTCGAGAAATGACGTTTCTTTGTCATTATGTGTTGATAACGACAATGTGGACGTAGTAAGTTATAAATGGGAAGACTGTGAAGAAGAGATTGAGATATACGTACAAAATTTAGAAGAGTTGGAGTTAGGTGATGATACTATAAATCATCAACATTTGCACTCCGCTAAACAGCAGGGCTTGAACAAAGAGGAGATATTGCAAATAATTCAACAAACTAAGTTAAACGTAGAAGTTGATCAAGAAAGAAGAAGAAAAGCCGAACGAGTCTTATATTTGTGCAATCAAAGGGTTGAGCAAATAGAAGAAAATTCTAGAGAAGAAACGACAATGCATGCAAACTTTAATGAAGAGCTAAACAGTACTCAAAACCAGATGCATATAACATCAAATAACATCACAAAAAGCAAACTCATTATAGAATCACAGCATAAACAAGATGAAGAACTTGGATTCAAGCTCCAGTGTTATTCATTGCAAAATTTGGTGTTGTCTTCTGAATTTCAAATGTTAGAAAATGAAAAGGTCGACATGTTCCAGAAAATAAGGGAAACCCGTAAACAAATAGATTCGATGAAGCAGAGAATTGGATTCTACGAAGAAAGAAAAGCGAGTGATGCATTGAATGGACTTAATTATAGATACAAAGAATTTACGGCAGAAGAGTTGAGAACTGCAACCAACGGATTTTCAGAGGATAATATGATTTCGTCAACAGTTTACAAAGGAAGGATGGAAAATACAACCGTTGCAGTTCATTTCAATCCTTCATTGTGTGATTCCGTAGAGAAATTCAAAGCTCAGGTAAGAAAAACAATCGATCTAGTCTCTTTCTTGTAAAAACATGATATGTGTATATATATCATGTGCAGGTCGAACTGTTGAGCCAAGTTAACCATCCAAATATACACATTATGTACGGTGCATGTACAAAACTCAAGTGCACTGTACTGGAACACATGGAAAATGGAAATCTTCATTCGATTCTCTTCTCTTTGTCTTCAAATAAGCAGATTATCCTTCCGTGGAACATGCGAATCAGAATTGCAGCCGATCTTTTATCTGCCATAGGATTTGTTCGTGGCTCACCTGTGCAGCATGTACACATCATGCACAACCATCTAGATGCTTCCGATGTGTTCATAGACAGCAAATTCACTGCAAAAATCAGAGTGCTTTGCTATGACATTGCTTCACTAGGACTGATAATTCTTCAGCTAATAACTGGAAATGAAGGAGTCAGAATGGAAGAAGTTAAAGCAGCTATCGAGGAAGGGAGAATAGTTCACATTTTAGATGGGAAAGCAGGAGAGTGGCCTATTGCTTTCGCCAGGTCATTTGCAAAAATTGGAGTCAAGTGCTGTGAACATAAAGAGGGAGTAAATTTTGTGAAGGAGACGGCAAAGGAGATTGATGAATTAAGAGAGAAGGCGGAGGTGCAAGCTATGCATGATATAGACGCACGTACAGAGAAGAAGATTGTGCCTCATAATTTCCTTTGTCCAATTTTGCAGGTCTGTCTTCGAACTCATATCAATACGTCTTTGAACTTCTATTAAATGTGTGGGATAAACCATATACGAACATTGTTGTAAATCAGGAGGTGATGAAGGATCCACATGTAGCAGACGATGGATTTTCTTATGAGTTAGAAGCGATAAAGGAATGGTTGAACAGCGGCCATGAGACATCTCCCATGACTAATTTGAAGATGAAGAACAAACTCCTCACACCTAATCATACATTGCAATGTCTTATTAGGGAATGGCACCGTCATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250131.1	3.3e-151	putative U-box domain-containing protein 50
Swissprot	Q9FGD7.1	2.1e-78	RING-type E3 ubiquitin transferase PUB50
trEMBL	A0A8N4EVM1	9.9e-121	putative U-box domain-containing protein 50 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65500.1	32.12	2e-93	340		U-box domain-containing protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g135041	AT5G65500.1	744	425	18	92	785	69	782	32.12	2e-93	340
g135041	AT2G45910.1	517	294	14	329	787	335	832	28.24	4e-52	203
g135041	AT2G45910.1	123	83	3	92	211	91	211	28.46	3e-08	57.4

Ortholog group

Species	Genes
Allium cepa	g10990.t1; g12872.t1; g135041.t1; g164083.t1; g164085.t1; g183438.t1; g183439.t1; g183440.t1
Allium fistulosum	AfisC3G03683; AfisC4G01073; AfisC5G04955; AfisC8G03355
Allium sativum	Asa2G02977.1; Asa2G02979.1; Asa4G00779.1
Arabidopsis thaliana	AT1G01670.1; AT1G01680.1; AT5G65500.1
Oryza sativa	LOC_Os06g06450.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	486	613	35.1	7.5e-09
PF04564.12	U-box	Domain	718	785	53.6	1.7e-14

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network