result

Gene information

Detail information of g148718

Location

Gene	Chr	Start	End	Strand
g148718	Scaffold_44060:HRSCAF_427146	318008	318698	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010941294.1	6.2e-31	glycine-rich protein 2
Swissprot	P27484.1	1.1e-29	Glycine-rich protein 2
trEMBL	A0A8B7CXP4	2.0e-31	glycine-rich protein 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G21060.1	58.17	2e-27	119	ATCSP4;ATGRP2B;GRP2B	glycine-rich protein 2B

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g148718	AT2G21060.1	153	51	1	6	158	13	152	58.17	2e-27	119
g148718	AT4G36020.1	175	72	3	3	158	6	180	48.00	3e-27	118
g148718	AT4G38680.1	153	44	1	6	158	9	145	60.78	3e-24	108

Ortholog group

Species	Genes
Allium cepa	g10454.t1; g120176.t1; g148718.t1; g248655.t1; g248657.t1; g348082.t1; g453915.t1
Allium fistulosum	AfisC2G05726; AfisC3G00629; AfisC3G01992; AfisC3G06581; AfisC4G03750; AfisC8G03465
Allium sativum	Asa1G01832.1; Asa1G01835.1; Asa1G01836.1; Asa2G01676.1; Asa2G05513.1; Asa4G03011.1; Asa4G03092.1; Asa5G05426.1; Asa6G03182.1; Asa7G07413.1
Arabidopsis thaliana	AT2G17870.1; AT2G21060.1; AT4G38680.1
Oryza sativa	LOC_Os01g36570.1; LOC_Os02g02870.1; LOC_Os08g03520.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	9	73	90.7	3.4e-26
PF00098.20	zf-CCHC	Domain	143	158	31.1	1.4e-07

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005886	C	plasma membrane
GO:0051276	P	chromosome organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003723	F	RNA binding
GO:0003729	F	mRNA binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006950	P	response to stress
GO:0006996	P	organelle organization
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009269	P	response to desiccation
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009628	P	response to abiotic stimulus
GO:0009631	P	cold acclimation
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010154	P	fruit development
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0016043	P	cellular component organization
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032392	P	DNA geometric change
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032508	P	DNA duplex unwinding
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0043457	P	regulation of cellular respiration
GO:0043467	P	regulation of generation of precursor metabolites and energy
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0071103	P	DNA conformation change
GO:0071840	P	cellular component organization or biogenesis
GO:0071944	C	cell periphery
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K18754	LIN28; protein lin-28	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network