result

Gene information

Detail information of g167950

Location

Gene	Chr	Start	End	Strand
g167950	Scaffold_46697:HRSCAF_429783	73928	76856	-

Sequences

CDS

Protein

Gene

>g167950.t1
ATGAACAATGAGTTGTTTCATCATCTGCCAAATTTGTTAACAATTTTCTTAACTTTCTTTCCCTTTTCTAGTGCAAGGGATAATATCACCATAAGCCAACCTCTTTTAGACAATCAAACCTTGATATCTTTAGATGGTCGATTTGCCTTGGGTTTCTTTACGCCTGGAAGATCTAGCCATCGGTATCTTGGTTTATGGTACAACCAAATTTCTGAACAAACAATTTTATGGGTAGCTAATCGTGATCATCCACTCATTAACTCCAAAGGAACTTTATCAATATCTACAACCGGAGAATTAGCTATTTACGACCAAAATTTAAATTCTACAGCTATTTGGCATGTGGATGCATTTGCTTATCGAGCTGTATTTCCAATAGTTTGGTTGTTAAACACAGGAAATTTGGTGGTGATGGCAGACTATAAAAACCGCCCATACTATCGTCAATGGGAAAGTTTTAACTATCCAACAGATACTTTATTACCAGGCATGAAGCTTGGTGTGCAGATCAACGTTGGGTATAACTGGAATTTAACATCATGGGCAAGCAGTTCTAATCCGTCATCAGGGAAGCAAATGCTTTGGATGGGAATCAATGGTTATCCTGAGTTGTATTTATCGGATACAAATTTCAAAAAATGGCGCAGTGGTCCATGGTATGGAAATCATTATATAAGAGTTGCTAGTGTGCAAATATATTTTGATGCCATTAATACACGACAGGAGATAAGCTGTTCATATAATACAGGTTATAAATTTCCACTAAGACTAGTAGCTAACGAGTCAGGCTTTGTTCAACTATGGTCATGGGAGAATAACCAATGGAATGTTATCTGGTATGAACCCAAAAATTTGTGTGATAAAATTGGAAACTGTGGTCCTAACGCAATTTGCAACTCGCAAAACAAGTCAATTTGTAGCTGTTTACCTGGATATACCGATAAGTGGCCAAATGGGTGTACCCGAAAGACGTTGAATTGTGATTACACCAACAAATTTGTAAATTTTAGTGGAATAAAGTTACCAGACACTTCGACTGTTGCTGTCCATAAAGGCTTGAGCTTCAGCAATTGCCAAGCTGTATGCTTTGCTAAGTGTTACTGCACTGCATTTGCTTTCGTTGATTATGGCAATCAATGTATGATTTGGTCAGCAAATCTTTCAGACATCAGTCTACATAGTGATACAGGTCACAGCCTCTACGTAAGTTTGTCAGGTGATAACAATGGTATTTCTAAAGTGATCCAGTTTACATGAATTGCAAATATTAGACAATTACAATTGGGAATTGTTACAGGGACTGCATTTTTTGTTATCAAGCAAAAATTTATTTTCTCTTCTTTTTCATGTTTCCTTTCTTTTAATTTTTTTGCTGCTGCTGTTATTATTATTATTTTGGTGTAGTATGATAAATGATACGGGGAAAAGAAGAAAATGAAGTCTCATAAAAATAAAACTAAATGTTTTTTTTATCCTCGGGTAATTATTCAAATTCGACTGATCTCAGCTGATTTTCTTTTTCTTTTTCTTTTTCAGTAGGTATTGTTGAATTTTGTATACTCAGTAATCTATTTTTTTGCCTGATCCGCATCGTTTTAATGTACTATCTCTTGATATTCAGGGATAATTTGGTAACCCATGTACTTAAATTATATTGTGCTATCCCATAACAATTTCAGTTTGAGTGGGGGCCCCTAATTTGTTCCCTCTAACATAAAATGGAGTTCCTTTTAAAATCCCCTTACAATTTCACAATTTTGCATAACAATTATTTGTCTATTATTAAATTTTCTTACAGACTTGCCTGATCAAAACAATAGCCTGTCAAAGGGAAACAGAGGTATGTTGATATATTCTCCGCTTAATGAAGTGATACCGCAAACCTTCCAATATTTCCATATTATATTAAACTTGAGTTAAAAATTTATCGTATAGACTCGCCAAATCGACGCGGAAACAGGATTAGACTTGTAGCGATCATTGTGACTGCCATATTTGGCATATTGCTGCTTGCTTGTCTTTGTTCAGTATATTTTAGAGGAAAGAATAAAAATCATGGTAAGTAAACTTGTAGACACAAGATTATCTTTGTTTCACTATTAATTAAATTTTCAAGCGTTTTAAACTGATTATTTAAAGCTACTTTGCTAAGTGTTCAAATAGATCATAAACGAATTTTGACTATCTACTAATGTCTAATTCTGACTTCCTTGGTTTTTTATTTGGTTATAATGTTTATCAACCATCACTTCAACGATAACTCTGAAGAAACCGATGAAGAAAATGAGCTAGATCTTCCACATATTGATTTTGAAATAATCGCAGCAGCAACTGATAACTTTTCAAATGAAAATAAACTTGGAGAAGGTGGATTTGGCCCTGTTTATAAGGTGCGTCATGTATTGATGGAATTTTACGAACAAAAACCCGCCTTTTACCCATATAATGAAATTATACAAAGAAATTAATTCAATCTATAATATAAGATTCCATAATGTACAGGGAAAGCTTGAAGAGGATCAAGATATAGCTGTTAAAAGGCTCAGTAAGTCTTCACAACAAGGTGTAGATGAGTTCAAAAATGAAGTAAAACTTATTGCTAAACTTCAGCATCGAAATCTTGTTCGACTTCTTGGTTGTTGCATTCAAAGAGAAGAAAGGATGTTGATATACGAGTATTTGCCCAATAAAAGCTTAGATGCTTTTTTATTTGGTATATCTTTACTTGCTTCAATAGTAATTAATTATCCATCAAGTTCAATATCAAAACCTACACTTTTGGTTTTCATTTCTATGTCAATGCTAGGGATAACACAGTTGCTATAATATAATTCTTTCAGGAAAGGAAGGAGATGCATTTCTGGATTGGAAGACTCGATATAGTGTTATTATGGGAGTAGCTCGGGGGGGTTCTCTATCTTCACCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019708805.2	2.0e-140	receptor-like serine/threonine-protein kinase SD1-8
Swissprot	O81905.1	2.6e-116	S-domain-1 (SD1) receptor kinase 8
trEMBL	A0A6J0PNE5	1.5e-140	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G11340.1	37.93	3e-117	419		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g167950	AT1G11340.1	617	322	14	27	594	88	692	37.93	3e-117	419
g167950	AT4G21380.1	615	312	16	24	594	33	635	40.16	3e-116	416
g167950	AT4G27290.1	608	309	15	12	594	11	574	37.83	5e-109	392

Ortholog group

Species	Genes
Allium cepa	g112745.t1; g157760.t1; g167949.t1; g167950.t1; g281083.t1; g417819.t1; g417822.t1
Allium fistulosum	AfisC3G04847; AfisC3G04970; AfisC5G03106; AfisC7G05141; AfisC7G05144
Allium sativum	Asa0G02200.1; Asa3G00974.1; Asa3G00977.1; Asa3G00979.1; Asa7G00057.1; Asa7G01017.1
Arabidopsis thaliana	AT4G05200.1; AT4G23230.1
Oryza sativa	LOC_Os01g26390.1; LOC_Os01g57510.1; LOC_Os01g57540.1; LOC_Os02g48080.1; LOC_Os04g15580.1; LOC_Os04g54190.1; LOC_Os07g30410.1; LOC_Os07g30510.1; LOC_Os07g35004.1; LOC_Os07g35260.1; LOC_Os07g35260.2; LOC_Os07g35310.1; LOC_Os07g35310.2; LOC_Os07g35370.1; LOC_Os07g35390.1; LOC_Os10g04720.1; LOC_Os10g04730.1; LOC_Os11g45540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	73	184	81.8	2.9e-23
PF00954.17	S_locus_glycop	Domain	214	315	64.1	1.4e-17
PF08276.8	PAN_2	Domain	327	390	53.2	2.1e-14
PF07714.14	Pkinase_Tyr	Domain	487	594	71.8	4.9e-20

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network