result

Gene information

Detail information of g171993

Location

Gene	Chr	Start	End	Strand
g171993	Scaffold_47152:HRSCAF_430238	250244	253044	+

Sequences

CDS

>g171993.t1
ATGTACTTTGATGATCAATTCAACATGCTTGCAATTCCTCCTGACAGCAATGAATTGATCAATGACTCCTTAGATATAGGTAAAGAGGTATCAAACAACAAGACCGATATTGTCGCTTCCCTTAGTTTAAATAACGAGGAATCGGAAAATTATTTTGATGTTGGGACAGTAAATGATAAATCGGTTGTATTTGGGACAGAAGTTACAATACCCGAAGTTGATTGTATAAGCGGAAATCCATTAACGCCCCAGCCAACTAACAAAATTGGTTGTAAAGTGAAACTCACTTCAAGTTTAGGAGAAGACGGAAAGTGGCGTATCAACAAGTTGTTTCTTGATCACAACCATGACTTAAGTCCTACGAAATCTCGATTCTTTCGATGTTATCGAAAAATTGATGAACATGTAAAAAGACAACTTGAAGTTTGCGATATTGCTGGAATTGGACCTAAGAAAAGTTTTAACGCATTAGTAGTCGATGCCGGTGGACATGAGAACTTGTCATTCATAGAAAAAGATTGTAGAAACTATCTTGATAAGGCAAGACAATTACGCCTTGGAGAAGGAGATGCTGTTGCGATTCAAAACTATTTCCTAAATATGCAGGCACAAAATTATAATTTTTTCTTTAGCATGGACTTAGACAATGATGGCCGACTAAAAAATGTTTTTGGGCAGATGAACGAAGTAGGAAGGCATATAAAGAATTTGGTGACAACGTGGCTTGCATGCATGTCTGATGTTGCTCCTAAAGGAATAATTATAGATCAAGACCGAGCTATGAAAAAGGCAATAGAGATTGCATTTCCTAATACTAGACATCGACTGTGTCTATGGCATGTGATGAAGAAGTTGCCTGAAAAATTTGAAAGCCATGGTTTGTATGAATCAATTAAAGGGATGTCCACCACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGACGGATACGTGAATGCTAAAACCACTTTGAAGCAATTTGTAGAGCAATACAATCACGCATTGAAGGCCAAAATTGAGAAGGAGAGTCAAGCTGACTTCAAGTCATTTTCACAGAGTATTCGATGTGCAACAACACATGCACTTCTTGTATTGACTAAGAATAATGTGACAACGATTCCGAATAGATATATTTTAGACAGATGGAGAAAAGATGTACTGAGATCTCATACGAGGATCCGACTCAATTATGATGGTGCACCGGCAACATCTGCACAATTGCGATATAAAGAGATGTGTAATGAATTTTCTAAAGTGGCTGATTTTGTAGCAGATGATGAAGTTTCTTTTAGTCATGTGATGGAATGGATAGACAGTAAGAAGTCTGAATTTTTTCTACAGAAACGCAATGCATCTCTTACATGCAAAACTGGTTTAAACAAAGATGAATGTGGTAGGATAAGGGATTGTTCAAAGGTGCAAGATCCAATAAGAAATAAAACCAAAGGACGAACTCGAACAAATAGATTCAAGTCATCCTTGGAGAGAAAAAATGAAGAGAAGTAG

Protein

Gene

>g171993.t1
ATGTACTTTGATGATCAATTCAACATGCTTGCAATTCCTCCTGACAGCAATGGTAATCATCTTTCATCAAATTTCTGTTTCAATATTTTCATTATCATTCAAAATTATGATTGGATTCATTGCATTTATTTACTTTTTGCATTACCAATCTCAAGCATCCATTCGGAATGATGAAGGATCCAACACATATAAAGTGATAGCAACAACAATCAAAAAGTTTGTTTAATCAAAAATACAACAAACTTATTTTGCAAAGTAGATGCTCTGACCCCACTTATTACTTTACTGTGTACAATATTCAATTTGTACTTTGGCACAAATACAATAATTTGCTTTTACACTTAACAATGGGTTTCTGTTCATGCACTGTTCATGCACTCAAATGTTGTTGTTTACACTATTTTAACCAAAATGAGTCAACTGAGATACTATGTATATGATTAGATAATGAAAACTAAAATGGATACAACATCAAATGCAAAATAATACCTACTCAAGACACATTGAATTACTATCCAAAATTTTCATGTCTGATTTTTTTTTTTCTCATGCATATTTTTGGAGTTGCCGTTATGATATTTTTATCATTTTGTCACTACTTGTATGATCATTTGCAGAATTGATCAATGACTCCTTAGATATAGGTAAAGAGGTATCAAACAACAAGACCGATATTGTCGCTTCCCTTAGTTTAAATAACGAGGAATCGGAAAATTATTTTGATGTTGGGACAGTAAATGATAAATCGGTTGTATTTGGGACAGAAGTTACAATACCCGAAGTTGGTATGAAATTTAATGTCGTTGAAGAAGTATTTCAATGTTTTAAAAACTATGCAAAGCATATGGGATTTCCAGCAAGAAAAAGATCAAGTAAAAGGGACGAGGATGGACACTTAAGATATATAACATTTGCATGTGGCTGATGTGGGAAACCAGATTGTATAAGCGGAAATCCATTAACGCCCCAGCCAACTAACAAAATTGGTTGTAAAGTGAAACTCACTTCAAGTTTAGGAGAAGACGGAAAGTGGCGTATCAACAAGTTGTTTCTTGATCACAACCATGACTTAAGTCCTACGAAATCTCGATTCTTTCGATGTTATCGAAAAATTGATGAACATGTAAAAAGACAACTTGAAGTTTGCGATATTGCTGGAATTGGACCTAAGAAAAGTTTTAACGCATTAGTAGTCGATGCCGGTGGACATGAGAACTTGTCATTCATAGAAAAAGATTGTAGAAACTATCTTGATAAGGCAAGACAATTACGCCTTGGAGAAGGAGATGCTGTTGCGATTCAAAACTATTTCCTAAATATGCAGGCACAAAATTATAATTTTTTCTTTAGCATGGACTTAGACAATGATGGCCGACTAAAAAATGTTTTTGGGCAGATGAACGAAGTAGGAAGGCATATAAAGAATTTGGTGACGTTGTCACTTTTGATACAACGTATTTGACAAACAAGTATGATATGCCTTTTGCACCTTTTGTTGGAGTCAACCATCATGGACAATCGATATTACTAGGATGTGGGTTGCTTTCAAGTGAAACAACGGAAACTTTTTTATGGCTTTTCAGAACGTGGCTTGCATGCATGTCTGATGTTGCTCCTAAAGGAATAATTATAGATCAAGACCGAGCTATGAAAAAGGCAATAGAGATTGCATTTCCTAATACTAGACATCGACTGTGTCTATGGCATGTGATGAAGAAGTTGCCTGAAAAATTTGAAAGCCATGGTTTGTATGAATCAATTAAAGGTAATTTGCAAAATGTGGTATATGATTCACAAGACTCGAAGGAGTTTGAGAAAAGTTGGAAAATAATGTTAGATAAGTTTGACTTGCATGATAATATTTGGTTGAGTGAATTATATAAGGAAAGACATCACTGGGTACCGTGCTTTGTGACATCAAATTTTTTGGGCAGGGATGTCCACCACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGACGGATACGTGAATGCTAAAACCACTTTGAAGCAATTTGTAGAGCAATACAATCACGCATTGAAGGCCAAAATTGAGAAGGAGAGTCAAGCTGACTTCAAGTCATTTTCACAGAGTATTCGATGTGCAACAACGTACGATATAGAGAAGCAATTTCAAAGTGTTTATACACTTAAGAAGTTCAAGGAAATTTCAAATAGAGTTAACCGCCAAGTTATATTGTGATATAACTGAAACTAGAGAGGGTTTCATGGGTACAGAGTTTGATATAAATGAAGATGTGGCTGTTGAAAATTATAGAAAATTGCTATCATTTACAGTTTTATTTAACAAAGAAAATTGCGAAATTAGTTGTAGTTGTCGAAAGTTTGAGTTTAAAGGTATACTTTGCAGACATGCACTTCTTGTATTGACTAAGAATAATGTGACAACGATTCCGAATAGATATATTTTAGACAGATGGAGAAAAGATGTACTGAGATCTCATACGAGGATCCGACTCAATTATGATGGTGCACCGGCAACATCTGCACAATTGCGATATAAAGAGATGTGTAATGAATTTTCTAAAGTGGCTGATTTTGTAGCAGATGATGAAGTTTCTTTTAGTCATGTGATGGAATGGATAGACAGTAAGAAGTCTGAATTTTTTCTACAGAAACGCAATGCATCTCTTACATGCAAAACTGGTTTAAACAAAGATGAATGTGGTAGGATAAGGGATTGTTCAAAGGTGCAAGATCCAATAAGAAATAAAACCAAAGGACGAACTCGAACAAATAGATTCAAGTCATCCTTGGAGAGAAAAAATGAAGAGAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022897637.1	6.3e-103	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	1.1e-38	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8S0QJ75	7.5e-106	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	29.33	4e-40	162	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g171993	AT4G38180.1	375	156	7	83	349	142	515	29.33	4e-40	162
g171993	AT4G15090.1	370	162	8	88	349	122	491	27.03	4e-30	129
g171993	AT1G76320.1	423	175	12	60	353	18	432	26.24	2e-25	114

Ortholog group

Species	Genes
Allium cepa	g157490.t1; g171993.t1; g338653.t1; g499628.t1; g499637.t1; g499639.t1; g509151.t1
Allium fistulosum	AfisC3G06873
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os11g45530.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	83	120	26.0	1.1e-05
PF10551.6	MULE	Domain	231	284	47.9	1.3e-12

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network