result

Gene information

Detail information of g173661

Location

Gene	Chr	Start	End	Strand
g173661	Scaffold_47348:HRSCAF_430434	542518	545312	+

Sequences

CDS

Protein

Gene

>g173661.t1
ATGGGGTGCGTATCATCTAAGCACGTGGTCAAATCATCGCCTCCCTTCGAGTATTCAAGCAATGCGGACGAATCTTCTAGAGGAATCCTAGACGGTTCCCTTTTTAACAAAGTTAATGTGGAGAGAACCGAGTCTATAGAATCAACCAAAGCCAGCTCGAACCGCACAAGCACCACAAGCGCTCGGTTAGGCAATCTCTATAGGTACATCGAAGGAGAACAAACTGCTGCTGGATGGCCCACGTGGCTTAGTTCTGTTGCAAGAGAGGCCGTTCATGGCATGGTTCCTCTTAAATCTGAATCTTTCGAGAGACTTGAAAAGGTAATTTGCTTGTTTTATTACGAATCATCTGAAAAATGTATTTTGTTCGAAAAAAAAAAAAGTTCAATGATTGTAAGAGCTATAGGAATTTGTAGGTACAAACATAGCCTATATGACAATTTAAATATTCTTTGTATACGTAATTGTTTAAAAAGATTCTTATCTGTACTTGAACAGTTAAAAATCCATAACACTATAATTGGAAAGTCTAATTTTTAACTGGAATACTTTATGTTAACTGTGTATGAAGGTTGGACAAGGCACATATAGTACAGTGTTCAAAGCTCGAGAATTGGAGACAGGGAAACTATTTGCACTGAAGAAGGTGCGATTCGACAATTTTGATCCAGAAAGCGTTAGATTTATGGCACGAGAAATAATGATTCTTCGCAGACTTAATCACCCGAACGTGATTAAACTTGAAGGGATTATAACTGCTCGCCTTTCTTGTAGTTTGTACCTTGTGTTTGAATATATGGAGCATGATCTTGCTGGACTTTCATCTGCACCCGATATCAAATTCAGTGAATCTCAGGTATATGGTCAAAAGTAAATAAATTTTCTGAAGGCTTTTTATATGTTGATCTCTCTGCGTTCTGTGTAATGCAGGTGAAATGTTACATGCATCAGTTGCTATCAGGGCTAGACCATTGCCATTCTCATGGTATAATGCATCGCGATATCAAGTGTGCAAATCTTCTAGTAAACAATGAAGGAATACTGAAGATGGCCGATTTTGGGTTAGCAAATTTCAGTGACAGGCCTCCTCATAATCAGCCTTTGACTAGTCGTGTGGTGACTTTATGGTATCGACCACCTGAGCTTCTTTTAGGTTCAACTGACTATGAAGCTTCCATAGATCTGTGGAGTATAGGGTGTGTGTTTGCTGAACTTTTTATCGGGAAGCCTATTTTACAGGGGAGGACTGAGGTGAACTTCAAGAATTTCTACAAATTTGAACCATTTCTTTTACATTTTTGTTAATTGTGTTCATGCTAACTAGGTGGAGCAAATACATAAAATATTCAAACTTTGTGGTTCTCCACCAGATGAATACTGGAAGAAGTCAAAATTACCTCATGCTGCAGTGTTTAAACCCCATCAGCCATATGTAAATTGCCTTCGCAAAACATTTAACTACTTACCAGAAAGTACCTTCAGATTGCTACAGACATTTCTTGCACTCGAGCCTAATAAGCGTGGAACTGCTGCAAGCGCTTTATCGTCTGAGGTAAGTTTTCGTTGTTCATATATCTTTAGTCTCATGGTATTATACTTTACAAAATCTCACACTTTGTTTCTTCTGATTTACAACAACAGTATTTCAAAACAAAACCATACGCCTGTGAACCTTCGAATTTGCCTAGATACTCACCCCATAAGGAGATGGATGTGAAATACCATGAGGAAACACATAGGTGAGCTTCATTGTATTTCTTAACACAAGCCAATGCTTCCTATACTTAAAAGGTAAACATTCAGTCCTTACTTTTAATAGGAGAAGAGCTTCACGTAGACATCGTGGGTCGGAAGTTTCAAATAAACCTTCTAGAATGCATAGAAGAGTTCAATCCATTAACCCACAAAAACTAACTACAAATGAAGAGGTTAATCTACTTCAAACTTTTCCTAAAATTCATTTATAATCTAGACACAGTCAACTGAAAACATAGAGCTACAGCAGGAACCATGGCAAAATTCATCAAGAAGGCTGCTTATTGATTTGGATCCTGAGCCAACAATCAATAATCAAGATGAAGAGCATACCTCGAAGCATGAATTGGAAAAAGGATATCCATTTTCAGGGCCTTTAACTTCTTCCTTTAGTACAAATGGAACTCATTGGCAAAGAAAACCAAGGTTAAAAAATAATACAATACAGGAGGATAAAAATGTGGAAAGCAAGGAGCCTGGTGAAATGGAGAAAAAATCGAATAGATGGGTTCAGCCTGATTTGGGCCATCCAAACAATACTAACAATCATCATCGAGATTTGCCAAAAGAACATTATAGAAGAGATACTGTATCCTCGAAGCACCATCGTGTCATTTCGGTAATACTCTACCTATTTAATATTGGTTAATTTTGGTTTGATAAGTATAATAAACAAGAATAAAACACCACCATTGAATCTTGAATCTAATGGCCTACAAAAGTTAGCTTTTGTCTACTATGATTATTTACCACAGTAGAGAAACATATCCCTAATAATATTTTAGAACATTTCCAAAATGAAGAAAACGGTTGAAGAAAAAAGTAAATTCTGTAGAAATAAAAAAAAGTTAACTCTTGTTGTTCTATTATGTTTATAGGATTTTCAAGGACATTCACAAAGGACTGATTTATCAGGGCATTTTCTATCCCAGCCAAACAAGGTCGACGAACTTCTAGAAAAACATGAACGACACATGCGTCAAGCTGTTCGTTCCATGAACCATGGTCATGAAAAGGTTAAAAATGGAGCTCTACATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275616.1	3.0e-219	probable serine/threonine-protein kinase At1g54610 isoform X1
Swissprot	F4ICB6.1	8.9e-168	Protein IMPAIRED IN BABA-INDUCED STERILITY 1
trEMBL	A0A5P1EFW9	2.2e-219	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G18670.1	47.79	4e-178	621	IBS1	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g173661	AT1G18670.1	701	277	12	1	616	1	697	47.79	4e-178	621
g173661	AT1G74330.1	688	263	17	1	616	1	678	49.85	9e-177	617
g173661	AT1G74330.2	689	262	17	1	616	1	678	49.78	2e-176	616

Ortholog group

Species	Genes
Allium cepa	g117158.t1; g173661.t1
Allium fistulosum	AfisC1G02293; AfisC1G05633; AfisC2G00146; AfisC3G06621; AfisC4G07199; AfisC5G00247; AfisC5G04052; AfisC6G04320
Allium sativum	Asa5G05993.1; Asa7G00383.1; Asa7G01806.1
Arabidopsis thaliana	AT1G18670.1; AT1G74330.1; AT1G74330.2
Oryza sativa	LOC_Os07g40550.1; LOC_Os07g40550.2; LOC_Os07g40550.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	102	387	224.1	1.8e-66

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0002229	P	defense response to oomycetes
GO:0002239	P	response to oomycetes
GO:0002831	P	regulation of response to biotic stimulus
GO:0002833	P	positive regulation of response to biotic stimulus
GO:0003674	F	molecular_function
GO:0051726	P	regulation of cell cycle
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0009966	P	regulation of signal transduction
GO:0009987	P	cellular process
GO:0010646	P	regulation of cell communication
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023051	P	regulation of signaling
GO:0031347	P	regulation of defense response
GO:0031349	P	positive regulation of defense response
GO:0032101	P	regulation of response to external stimulus
GO:0032103	P	positive regulation of response to external stimulus
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043900	P	regulation of multi-organism process
GO:0043902	P	positive regulation of multi-organism process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0080134	P	regulation of response to stress
GO:0097472	F	cyclin-dependent protein kinase activity
GO:0098542	P	defense response to other organism
GO:1900424	P	regulation of defense response to bacterium
GO:1900426	P	positive regulation of defense response to bacterium
GO:1901564	P	organonitrogen compound metabolic process
GO:1902288	P	regulation of defense response to oomycetes
GO:1902290	P	positive regulation of defense response to oomycetes
GO:2000031	P	regulation of salicylic acid mediated signaling pathway
GO:2001023	P	regulation of response to drug
GO:2001038	P	regulation of cellular response to drug
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network