result

Gene information

Detail information of g175586


Location
GeneChrStartEndStrand
g175586Scaffold_47610:HRSCAF_430696357199359399-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrEAY90387.12.8e-21hypothetical protein OsI_11965
SwissprotQ84R94.14.5e-24OsJAZ5
trEMBLA0A8T3AHT87.0e-22Protein TIFY

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G19180.141.613e-2197.4AtJAZ1;JAZ1;TIFY10Ajasmonate-zim-domain protein 1

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Ortholog group
SpeciesGenes
Allium cepag121422.t1; g143550.t1; g175586.t1; g199998.t1; g321095.t1; g524015.t1; g526236.t1; g529623.t1; g537452.t1
Allium fistulosumAfisC1G03921; AfisC2G07008; AfisC3G00614; AfisC3G01670; AfisC3G03920; AfisC4G02030; AfisC4G02950; AfisC5G03580; AfisC8G00209; AfisC8G00621; AfisC8G00783
Allium sativumAsa1G04293.1; Asa1G04294.1; Asa2G00577.1; Asa3G02593.1; Asa4G01696.1
Arabidopsis thalianaAT1G19180.1; AT1G19180.2; AT1G74950.1
Oryza sativaLOC_Os03g28940.1; LOC_Os03g28940.2; LOC_Os07g42370.1; LOC_Os07g42370.2; LOC_Os07g42370.3; LOC_Os09g26780.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF06200.11tifyDomain53761.04.2e-17
PF09425.7CCT_2Motif8811356.12.2e-15

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003712Ftranscription cofactor activity
GO:0003714Ftranscription corepressor activity
GO:0006952Pdefense response
GO:0042742Pdefense response to bacterium
GO:0007165Psignal transduction
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006950Presponse to stress
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0009555Ppollen development
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0009611Presponse to wounding
GO:0051707Presponse to other organism
GO:0009617Presponse to bacterium
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009753Presponse to jasmonic acid
GO:0009755Phormone-mediated signaling pathway
GO:0009791Ppost-embryonic development
GO:0009867Pjasmonic acid mediated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009908Pflower development
GO:0009966Pregulation of signal transduction
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010646Pregulation of cell communication
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0023051Pregulation of signaling
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031347Pregulation of defense response
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0042221Presponse to chemical
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048229Pgametophyte development
GO:0048367Pshoot system development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071395Pcellular response to jasmonic acid stimulus
GO:0071495Pcellular response to endogenous stimulus
GO:0080090Pregulation of primary metabolic process
GO:0080134Pregulation of response to stress
GO:0090567Preproductive shoot system development
GO:0098542Pdefense response to other organism
GO:1900067Pregulation of cellular response to alkaline pH
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000022Pregulation of jasmonic acid mediated signaling pathway
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K13464JAZ; jasmonate ZIM domain-containing proteinEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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