result

Gene information

Detail information of g188843

Location

Gene	Chr	Start	End	Strand
g188843	Scaffold_49428:HRSCAF_432514	12050	20445	-

Sequences

CDS

Protein

Gene

>g188843.t1
ATGCTCCTGGCAACGATTCTGTTTACAGAAGATACTTATATGAACATAAACGAATTCAAGCCTCTTGGTACTGATTTTGATTTGGCGGATGATTTGATGGTCTATTTTGATGCAATAGAACAAGATTTTGATCCTTTGAGCGCAAATCAATCAGACATTAACAATCATATAGTCAAGTTAGAGGTAAATTTCAAATTATTGATTGTTTAAAAAAAATACACGATGATAACACTTATTTCGTGAATGTCAATTAAATTGCAGGTTGAGGGAAGTAACTATGCTACAAATAAAGAAGACTGCATAGAGACTCCTGGAACAAATATAAGAATGGGTGCTCCATCTACAGAATTCATAGATGCTACCAATCAATTGGAAAAGACTAGAAAGAATAACATAATTGCCCTAGGTTTTTATTTTTAGTTGTTAGCCAAACCTGTGATTTTCTTACTAGGACTAGTCTTGTTCTATTCAAATTTGCCTTATTCAAGTTTTTAACTTGGTAGAAGTAGACTTGATGTTACTAAATTTTGTTAGTGTAGATAGAAAAACTAGTGGCTGACATCATAAACTGAATTAAATGATATGCACTTTTTTTGCTCACATAACTAAAATGAAAATATATCGTTCGTTAAATGTGCAAGTAAATAAAGGTTGGAACAAGTCATTTAGAAAGCATGTTGTGGGCATGCTGAGCTTGATTTTTACACCACCTGCAATGGCTGCTGCCGATTCTTGTAAAGGCAAAGGTATCCAGATATCGAGTAGTAGCAGCAGCTCATCTACTCATGTTTCTATGGGTATGATCATGTATCCTAAGCTGTGATTCACATTAAATTGCTTGTTTTACGATGCACCTAGCAACAATTTTTTTTAATATTAGATATATTTACAATCATTATCAAACATGTTTAACATCAATTTATAAGTCAAGCAATAAAGAATATCTTAAAAGTGTTCAAATTTTACTAAAAATATGGTTCAAAATAGAAAATTATGAAAATTGAAAATTCAGGTGGTTCATCCAATCATTTGCGGAAAAAAGCGTAAGCCATAAATATGGATTTAATGAGCTAGTATGAAGTTTGGCTATTATGTTCTCTTCTTAGTTGGGTGCAAAATGTTAAGGGTCAATTTTTTCGCATATGAAACAGTGATTTTTCTTCTAATTATATAATTATCTATGTGCTGAAACAAAAAGAGAAGAAAAGAGATCTAATACGGGTTATATATATATATATGCTTGTAATAACTTAAGCAGTTTTAAAATAGTAAAAAAAATGATAGTGGTGTTGGTTACGCATTTGGACTTGCTCTATAACTAGGCAGATCCAACATTATTTCCTTTACATTCCACTTCCAACAGGCCACAATCCCAAAAATAACCCCAAACCACGCATCCTTCTAAAAAACTCCAACTACATGGACATCTTCACAAACTACACATATGCCCCAGCACATAAGTACTTGCCACTTATTTTGATTCTTGGATACACGATATTCATTAATTATGATGATAACTAGACTATTAAGATAGATTTTTTCTTTTTCAATTATTATGGATACAAGTAAATAATGTTAGACTGAAATATGGTCGCTAGCATTGAGTATTTTAGATATTGATTTCTACTGCTATTGTAACAACCCGCATATTTATCGAGTTTATATTTAAATATTTTATTTAAATATTAAATCGTTAATCGAATTTTGGTCCGAAAAAACTACTTTTTGCAAACGGTCAAATTAGGACTCGAGACCACTTCCATTGAGTTCGAAATGCCGTTTACAACTTTTTAAGTATAAACATCGATAGGTTTTGGAGTTAGTGAAATTTTCACTAACTTTTTCCGCTTTGGACTTTGGGTTAGTTTAGCCTATTAAGCCCAAGTTCCAACCCTCTTCTCCTCACTCTTCATAAATTTCCTAACTAACTCAAGCTTTGACATTAATGGTGAAGAGAATAGGAAATTAAAACTCAAGCTCAAATTCAATTGCAACTCAACATTCAAACTCCAATTCAAGTAGAAGATATTGGATTCAAGCTTTAAGATTGCTTCTCCTTGCTTTCAAGCTTCATCTTCATAAATTTTAGTGCAAAGGTGAGATTTTTATCTCACAAATCTAGTCTATAACTATATTGAACTGTTGGGAATGATTCCCTATTCACTTTTGTATGCACATTTGCATTTGGTTTGGATTGGATTGGCGAAAAACTCCAATTTTTAGTGTTTTGGTGAATTTTTCTGCACTTAGGTCGTTCTGGCCATTTTCGTGTGTTCGGAGTTAGGTCGCTCGCGACCTAACCCTTAGGTCTTTCGCGTGTTATCGCGCTAGGTCACACTGCCTTGAATCTTCACTTCGGAGTTAGGTCGTTGAGCCTTAGGTCGTAGGTCGTATGGACCTTAGGTCGTAGATCGTCCTGGCCATTTCTAACGTCTTCGGAGTTAGGTCATATGGACCTTAGTTCGTAGGTCGTATGCACCTAGGTCGCTAGGTCGTATGGCTTTAGGTCGCAATAGGTCGTATGACCTTAGGTCGTTAGGTCGTAGACCTTAGGTCGTTAGGTCGTTTGGCTTTTAGGCCGCTTCCACGCTTAAGTCGTTCGACTCTTAGGTCGTAACACTTAGGTCGCTCGCCTCTTAAGTCGCTAGGTCGCGTGCCTTTAGGTCGCGTTCCTTTATTAGGTCGCGTGTCTCTGTTAGGTCGCTGACCTTCTTAACTCGCATGACCTAACCCCTAGGTCGTTGGGCCTCGTTTCTACTTAGGTCGCTGCTTCTTATAGGTCGCTCGGCTCCCTTGATTTCTTTAGGTCGTTTGAGTGTTTAGGTTCGCGAACCCATTTTAGGTCGCATGACCTTTACCCTTTTAGGTCGCTAGACCACTAGGTCGTTTCCCCTTAGACCCCTAGATCGCAACCATTAGGTCGCTCGACCCTATCCCTCTTAGGTCGTTAGACCTCATTTTGTCATCACTAAGTCGTACCGTTTTGGACGGGGCTCTGCCCCGCACCCCGCCGGGGGCGCTGCCCCCTGTACCCCCGACCTGACGAGCAGGTCGAACCCCGTAAGCGTGGCGTTGCCCCCGCACCCCCACCTTGGGGGTTGCCACCCCCCGGACCCCCCTCCGTAGGGATCTTATCTGAAAAACATTTGAGCTGATTTCCTTGGATTTTATTCGCATCTTCGTATGCCATCTTTGTGACTGATTGTTTCTACAATTGCTTCTGTGTTTTGTCACTTTTATAATATAAAGGTTTCAATACTAGTAGTAAATATCAAAACTCTTTTAACAAACAATTTCAACTCTATTTTTAATAAAAAAGCTCTTTTCTTAAACCGTTTTCCAATCTACTAGTATATACAAACCTTTGCCTCACTCGGATGAGAAATCTAATTAAACGACTTAGTAAAACAAGTGGTATGAAACGCTTGCGTTCACTTCGTCGGTTAATTCTTGGACTTGTTCGATTGAACCTCTTGTGACAATTTCCTAGTGGAGATTTACAGTTTGTTCGTAAATATTTAAGTTAAGCAAGTGGTTATGGGACATGAAGCTAAACTTCTATATTTACTAGCTTAGTGTAATTGACACTTCTCGTTGATCATGACGATCATTTTGATGATTTAGACTAGCAACTGTGCGATGTCTCTTATTGCGAGGTTAGACTAGACACCACTTGTGTGATTCCACTCACACATACCTTTTTTGCTTTTTGGTTTAGTCTGGACCTTAATCTGTGTGATTCCATTCACACATGTGGGGTAGCTCCCCCTTGGTCTTCGGACCGTCATGTGATAGGCCTCTTTTTCTTTCTATGATTACTGACTTCTTGCATTGATTTCTAGAATTTATGTCATTGACTTGTTATGAGTACAAGTTTGGGGTATGGTGCCCTTTCGAATCTTTGAGAAGAATTCTTGTGATATTGATTATTTCTTATTGGTTGATCTTCTGTTGATCATTATTTACATACTTATAGTGGTATGTCATTATGGATATTTTATGTTTATGCCATATCTTTATGTTATATCATGTCATCTGATATTTATAGTTAGACTGATCCGTTTATTATTTTCTTAAATAATACTCGGGTCAGACCGAGATGTTACAGGTGCTTCTGCTTGACTTCTTCCCAGGGATTCATCACTCTGACTTTTGGCTAACTGTTTAGATTAGCAGCTTTTTGTTGTATACACTTGAGATATAGACTCATAGTTTGTATTCTTTTGTATAGCAACGTTGTTGCTATTCTTTTGTATTATCGTGATCTTACTGACCACTACTCTGATGTACACTTTCATGTGTTAGTTATATATTCATATCTTCTTCCGCTTTTGTGATATGGATATCTGTGACTGATTTGTGTTATGATTATTTCTATGTTGTGCGAAGATTATTTAATAAGCACCGTGTGATAAGCAATTACAATGGCCGATGGAATGCTCTGCTCAACAGCTATTCTCTATGCTAAGTAACGGCACTACACCATTTAGTGTTCTGGCTAGTGGGGCTCTATAGACCCTTGGTGGTTCCAGATAACTGTCAGATTTTAGGTTATACATTGACATGTTTAATTAGATTTGATTAATTATTCATTTATTCTTTTGATTAATTATATGTATCTATATATGATTTTGGAAATTGAGACGATCAACTTCTCATTCAAATATCCCATTTTCACTGTTAAAGCTTGATGGTTGGCATGAGAAACAAGTACTAGCAAACAAGGGATGCATTAGCTTTTGTAATATTTCTTAACTAAAACTTAGGCAAGTGAAACAACTCTGATAATACATGTAAATTTCATACTTAAATTCTTAATAGCACATGAATTTGCAATCCAAATTGCCTTCTCATATGTTATTTGCATTAAGCACTGTGATATGAATTATGTGTAAATCCTCATTTAGCATTACATAATGTGAATGTTTTTTTGAGCTATTAATGACAATGATGTTAATGCAAATCAAGTAAATTAAATTATAATTTAGTAATTAGTATTTATCAATATCGTTGTGTGCTATTCAATATTAGAAGTAACACAATTTTGAGATGGCTTCTAGATGAACTTTAGCGTCCAAGGTGTAAATCCGAGATAGACGCTCCAACAATCTCGTCCTATACAAGATTGAGTTTGAAATTTTCAAAACGATGCGTGATTGATATATGAGATTTAAAACATTATTGTACATATATATAACGAATTAAAAATATATAGCTAACATTGGAAATTATGTGTGCGTATCGTGTATGTGTGTGTACGTATACTCATACATGTCAGGGTAAAGTGGATTCCCTTAGCAAAATTTGCTTTTCTTTTGTTGCTGCTGATGCCGCCATTTTGAAGAACCACCCTCGCAACATAAATGCGCACTTCCTTAGCCATCATCAAACAATAAAATGACTACGACTTCATTTATTGACTAATTTCTCTAAATTTTTGCATAATAACATTTAATTTACCAAATTGAAGTTGCAGCTCAAATTTTTGAAAAAAAAAACCAACATGACCACCACCTAACATATAGGGTAACAATGCAAAACACATGAATATCAGCTACTCAGATTTGGATTGCATTTGATTTAGGAAACTAAGAGCAATATCAAACATTGCTTTGTCAATAAGTTATGAAATGGAAAAGTAAAATCTGTACTAAGGCACAAACTTGTGCAACTGCAACATTAAACTGTATGAACCTCACACTTATACAAAAATCTTTCTAAAAAAAGCCTGTAGCATAAGCTTCTTAAGCCAAGCATAAGCTGTCTTTAAATTGTATGGCACACATGTTATTACTGTCCAAACATTAGATTTCAAGACATTAAATGTAATTAGGTAGTAGGTAGATCATAGCTCAAGCTTTGAATCAGAACTCAAAATCAATATACATATCACAAAGGTGAGGGACAAATTATAACTAAACCATACCCATTTGTTTTCTACATTTCATACGTGGTCATATATATCAAATTTCACATGCAATTTTCTGCATTTCCTTTGAAGATATAGGTGAAAGCATACCATGTTACTGAATTAATGTACGTTTGGGAAACAAATCATTTTTGGCTTATCTAACTTCAAATATATTTTGCTATGATACTGGCTCTACTACATGCAACTTTAGCAAATTAAGGACAACCTTATGCAAAAGAGAGTGAATTTTCTGTTTTTTCCATTCTGAACAGAGTGTCTGTAGAACTTCTTACAATGATTGCTAGTAAAGAAGTTCATTTCATGTATTTGGTGCATATTTCAGGAATTATAGCATTAAATTTGGAATGGGCTAAATATTTGAAGAATTATAGTATGAAATTAATAGTTTGGAGAAGGGCATTAATGTCTTTATACATCACGTAAACTATGTTTAGAGGCCCGTTTTAGACAGTTACTAAGTGTACTAAAGTTGAAAAATAAGGAGCATAACCCTAAGTTGTCGATGGCACAGCTATTACAACACAACCTGAAAAACAAGTGTTGCAGTAAAGTCGATGGTTCCATACATAAATGCTTATAATGTGACTTCCTCAAGCAACCAAATAAAAGCTTGGGCATCTGTTCAAGAAAAAACCTTCGATACATGTATACATATCACAATGCACCAGTAAATTTTCTAGTTCCATACGCAAGCGCTTATATCTATTATATGACTTCCTCAGGCTACCGAAGAAAAGTTTTGGTAATTCGTTCAAGAAAACACCTTCTTCAAGAAAGAAAACTCTGCAGACAAGAGTTGCGGAAGAGAGTGGTCCTGACACCTCATCAGAGAAGGTTTCTTTTCTGAAAACAGGAAAAATAACTAAAAAGTGAGTGCCTTATAATATATGCTGTCTTAGTTTGTAGGGGTCTTATATTGCACTTTTGTGACTTACACTTGTAACATTCATCTCTCCTAAGGGACGTGAGTCTCCACAAGTTGGTCTTCATGGATGATATTTTACCCGAGGGAACCGAAGTAGGGTATTTTGTTCGTGGCAGGGTATGAGTAACTCTTTTTGTGCTGAAAATATGCTTCATGTTATCATCGTCAACCCCATCATTATACTTACCGTTGTCATTGTTGTTATTTTTGTCGTTAATGTTAATTCCCTTGGCTAAGAAAGTTGGTGATGTATTTCCATAGAAATTGCTGGAAGGCTACATTAAAGATCAAGGAATCTACTGCCATCACTGCAATTGTGTGGTATGACCCAGATATGTCTGTTTGTAGGGTCGATAATTCCTCAAAAATAATCTAATACTTAAATGAAATTTGATGCTTGTTGTAGGTTGCCCCTTCTGGATTTGAAGCTCATGCTGGTAATGCATCAAGAAGGAAACCGTGAGTTAATGATTGAATACCATATGAGTTCTGTGGTAAAACGGTTACCATATTTTGGACTGTAATTCCTGTATTTTATTCTTTTATTTGCTTTCTAGATACCATAATATATACACATCAAATGGAGTTTCGCTTCATGAGTTGTCGGTATCTTTATCAAAAGGAAGAAAGAAGGCCAGTAAGGAAAACGATGATCTATGCTGCATTTGCGGCGATGGTGGAGATCTTCTTCTTTGCGATCTCTGCCCCAGAGCTTTTCACATAGGTATTTTTGATTTGTTATTCTGTAGTATCTGGCATAGCTTGATTTTAAAGATACGAAAGGAGGAATTCAGACCACGTGTAAATATTTGACCAAACTTACTAATTTTCTGCCTTTTTCATATGTTACCGTATTCTCCTGCAGAATGCGTGGGGATATCAAACATCCCTGAAGGTGATTATGAGTGTCGCTATTGTCAGCTTATGCATGAAAGGGAGAAGAATGTAGCTTATAATGCTAACGCAATTGCTGCTGGAAGGGTTGCTGGGGTTGATCCTATCGAGCAGATAATACAGAGATGTATCAGGATTGTGAAAACATCTAATGATATTAGCAGCTGTGTTTTATGCAAGTTAGTGCCTCACTTCGATATTAATTGTTAGATTGTTAAATTTCAATTCTCAATACGGTGCTTATTTATGTTACCGCTGTTCTTTTTGTTTGTTCTTGAAAACTAATTAGCTAGGATTATCGTTTGATAGTCTTCCTTCTTTTGCTTGAACTATGCACTGTAACTTGTTTGATGGACCCTCGTTCTTTCTGTTACCGCTATTCATTTTGTTTGATAGTCTCAGATGCTCCAGATCATTGACGAAACAGTACAGTAATGTAATAATACTCACTGATTATATGCGATTCTGTAGCATGACATGCTTGCTGTTGTATTTTTTATTTTTTTTAATTGAAAATATTGCAACAGTTACCTTCTATTTCAGTTTTAGTATCTGATCGATTGCTTTCTATTCCAGTCTCACATTTGTGTATATTTCTTGCTGTACTGCAGATGCCATGATTTCAGTAGGTCAAGTTTTGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010940549.1	6.1e-90	uncharacterized protein LOC105059081
Swissprot	O43918.1	1.6e-07	Autoimmune polyendocrinopathy candidiasis ectodermal dystrophy protein
trEMBL	A0A6I9SBN9	4.4e-90	uncharacterized protein LOC105059081

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G27980.1	59.90	2e-67	253		Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g188843	AT2G27980.1	207	81	1	176	380	594	800	59.90	2e-67	253
g188843	AT2G36720.1	255	124	2	128	380	465	719	50.59	2e-67	252
g188843	AT2G37520.1	210	104	3	176	381	367	564	42.86	2e-47	186

Ortholog group

Species	Genes
Allium cepa	g143854.t1; g188843.t1; g459363.t1
Allium fistulosum	AfisC2G08872; AfisC5G05921
Allium sativum	Asa4G05565.1; Asa6G00693.1
Arabidopsis thaliana	AT2G36720.1; AT2G37520.1
Oryza sativa	LOC_Os06g01170.1; LOC_Os06g51450.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF16135.2	Jas	Family	180	251	77.7	5.2e-22
PF00628.26	PHD	Domain	280	320	31.1	1.4e-07

Gene Ontology

Accession	Ontology	Name
GO:0000118	C	histone deacetylase complex
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000228	C	nuclear chromosome
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000785	C	chromatin
GO:0000790	C	nuclear chromatin
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001103	F	RNA polymerase II repressing transcription factor binding
GO:0003674	F	molecular_function
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0005694	C	chromosome
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005813	C	centrosome
GO:0005815	C	microtubule organizing center
GO:0005856	C	cytoskeleton
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008134	F	transcription factor binding
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0015630	C	microtubule cytoskeleton
GO:0016043	P	cellular component organization
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016581	C	NuRD complex
GO:0017053	C	transcriptional repressor complex
GO:0019899	F	enzyme binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032991	C	macromolecular complex
GO:0032993	C	protein-DNA complex
GO:0042826	F	histone deacetylase binding
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044427	C	chromosomal part
GO:0044428	C	nuclear part
GO:0044430	C	cytoskeletal part
GO:0044446	C	intracellular organelle part
GO:0044451	C	nucleoplasm part
GO:0044454	C	nuclear chromosome part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050808	P	synapse organization
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0070491	F	repressing transcription factor binding
GO:0070603	C	SWI/SNF superfamily-type complex
GO:0071840	P	cellular component organization or biogenesis
GO:0072553	P	terminal button organization
GO:0080090	P	regulation of primary metabolic process
GO:0090545	C	CHD-type complex
GO:0090568	C	nuclear transcriptional repressor complex
GO:1902494	C	catalytic complex
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:1904949	C	ATPase complex
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0099172

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network