result

Gene information

Detail information of g188956

Location

Gene	Chr	Start	End	Strand
g188956	Scaffold_49453:HRSCAF_432539	483634	485253	-

Sequences

CDS

>g188956.t1
ATGGATTCTAAAGTTCTAATAAATTTGTTCTTCTTAATTTCTTTTTTTCTTTCACTTGTATTGCTACAAAGAAAAAGAAACAAAAATCACACAAGCCATAATCTCCCTCCAGGGCCAATTAATCTGCCAATAATCGGTAGCCTTCGTAATATCGGAGAGCTTCCTCATCGTTCATTTCACAAATTATCTCAAAAATACGGGCCTCTTGTTTACTTCAAACTGGGCAGCATCCATACTATCGTTGCTTCTTCAGTTGACACCGCAAAAGAATTCTTGAAAACAAATGATCTCAAGTGCTGTAGCAGACCGCTTCTCACACCTTTGAGAAAATTAACTTACGGCTTCCGAGATGTTGCCTTCATACCATACGGTGAAGAATGGAAGGTGCTTCGTAAAATTTGTATTCTACATCTGTTCAATGCGAAAAAGGTAACATCTTTCCGCCCGATACGGGAAGAAGAGGTGAAGAAGATGATCAAAAGAATGATACTTTCAGAAAATAAAGAAGTAAACCTTGACGAGGAGCTTGTGCTGCTTGCTAATAATATAACATGTAGGACTGCACTAGGAAAACAGTATGTAAATGATGGGGGTAGGGCTGAGGTACATGAAATTCTAAAGGAGACACAAGCTTTATGTCATCAATGGATGCATGCTCGGTTGGAGAAGAACTTTCTTGAACTTGACAAATTTTACCAACAAGTCATTGATGGACATGCACATGCACATGCACATATGAACAAAGTGGATAGCCTTAAAAGTGAGAAGGAGTACTCTGGCGAAGATATTGTTGATTCTTTGTTACATATCCAGAGGACGACAAATGAGTTAACAAACGAGCAGATAAAGGGAATTCTCATGAATATATTTGTAGCAGGGTCAGACACATCATCGGCAGCGGTAGAATGGGCAATGACAGAACTAATGAGAAATCCAGAGGCAATGAAAAAAGCACAGGCTGAAGTAAGACGAACGTTTACAGAAGATACGGAGATAATAGAAGAAAGTGAGATAGATAAACTAGCATATCTGAAATGCGTAGTGAAGGAAACAATGAGACTGCACCCTCCGGTGCCACTGCTAGTACAAAGAGAAACGATGCAACATTTTAGGGTCGATGGATACGATATACTTCCGAGAACAAGATTACTGATTAACGTATGGGCAATAGGAAGAGATCCGAATGTTTGGGAGAATCCGGATGACTTCTGTCCGGAGAGGTTTATGGATAGTTCCATAAATTTATGGGGACAAGACTTTGAGCTCATACCATTTGGTGCTGGACGAAGAATTTGTCCAGGGATGCATATGGGAATCAATGTGGTAGAGCTTGCTTTAGCTAACCTTCTTTGTCCTTTTGACTGGAAATTGCCTGAAGGAATGTCGGTAGAAGATATTGACATGGGTGAGTCTCCCGGAGTTACTGTGCATAGAAAATCTTGCCTTAAACTCATGGCTGTAAAGCATGGAGAAGTCTAG

Protein

Gene

>g188956.t1
ATGGATTCTAAAGTTCTAATAAATTTGTTCTTCTTAATTTCTTTTTTTCTTTCACTTGTATTGCTACAAAGAAAAAGAAACAAAAATCACACAAGCCATAATCTCCCTCCAGGGCCAATTAATCTGCCAATAATCGGTAGCCTTCGTAATATCGGAGAGCTTCCTCATCGTTCATTTCACAAATTATCTCAAAAATACGGGCCTCTTGTTTACTTCAAACTGGGCAGCATCCATACTATCGTTGCTTCTTCAGTTGACACCGCAAAAGAATTCTTGAAAACAAATGATCTCAAGTGCTGTAGCAGACCGCTTCTCACACCTTTGAGAAAATTAACTTACGGCTTCCGAGATGTTGCCTTCATACCATACGGTGAAGAATGGAAGGTGCTTCGTAAAATTTGTATTCTACATCTGTTCAATGCGAAAAAGGTAACATCTTTCCGCCCGATACGGGAAGAAGAGGTGAAGAAGATGATCAAAAGAATGATACTTTCAGAAAATAAAGAAGTAAACCTTGACGAGGAGCTTGTGCTGCTTGCTAATAATATAACATGTAGGACTGCACTAGGAAAACAGTATGTAAATGATGGGGGTAGGGCTGAGGTACATGAAATTCTAAAGGAGACACAAGCTTTGTTCATGGCTTTCTTCTATGCTGATTACATACCCATGCTTGGATGGCTAGATGTCATCAATGGATGCATGCTCGGTTGGAGAAGAACTTTCTTGAACTTGACAAATTTTACCAACAAGTCATTGATGGACATGCACATGCACATGCACATATGAACAAAGTGGATAGCCTTAAAAGTGAGAAGGAGTACTCTGGCGAAGATATTGTTGATTCTTTGTTACATATCCAGAGGACGACAAATGAGTTAACAAACGAGCAGATAAAGGGAATTCTCATGGTCATAAGTTTAACTTTAATCTTTTTGTTTGCATAAACTAATCATTATATGCTATAACTTAACTGATATCCTTGTGTTTGTAACTTTGTAGAATATATTTGTAGCAGGGTCAGACACATCATCGGCAGCGGTAGAATGGGCAATGACAGAACTAATGAGAAATCCAGAGGCAATGAAAAAAGCACAGGCTGAAGTAAGACGAACGTTTACAGAAGATACGGAGATAATAGAAGAAAGTGAGATAGATAAACTAGCATATCTGAAATGCGTAGTGAAGGAAACAATGAGACTGCACCCTCCGGTGCCACTGCTAGTACAAAGAGAAACGATGCAACATTTTAGGGTCGATGGATACGATATACTTCCGAGAACAAGATTACTGATTAACGTATGGGCAATAGGAAGAGATCCGAATGTTTGGGAGAATCCGGATGACTTCTGTCCGGAGAGGTTTATGGATAGTTCCATAAATTTATGGGGACAAGACTTTGAGCTCATACCATTTGGTGCTGGACGAAGAATTTGTCCAGGGATGCATATGGGAATCAATGTGGTAGAGCTTGCTTTAGCTAACCTTCTTTGTCCTTTTGACTGGAAATTGCCTGAAGGAATGTCGGTAGAAGATATTGACATGGGTGAGTCTCCCGGAGTTACTGTGCATAGAAAATCTTGCCTTAAACTCATGGCTGTAAAGCATGGAGAAGTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264444.1	1.2e-154	cytochrome P450 71A9-like
Swissprot	Q9LTL0.1	5.6e-117	Cytochrome P450 71B26
trEMBL	A0A6P5EMB1	3.3e-138	cytochrome P450 71A1-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57260.1	45.53	5e-118	421	CYP71B10	cytochrome P450, family 71, subfamily B, polypeptide 10

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g188956	AT5G57260.1	481	222	7	36	488	31	499	45.53	5e-118	421
g188956	AT3G26300.1	509	247	7	6	488	6	496	42.83	4e-117	418
g188956	AT1G13080.1	508	241	8	10	488	7	500	44.09	6e-117	417

Ortholog group

Species	Genes
Allium cepa	g188955.t1; g188956.t1; g374713.t1; g421063.t1; g422708.t1; g95344.t1; g95346.t1
Allium fistulosum	AfisC4G07006; AfisC5G02654; AfisC5G02688; AfisC5G02689; AfisC5G02694; AfisC5G02707
Allium sativum	Asa0G03530.1; Asa0G05283.1; Asa4G00056.1; Asa4G00057.1; Asa4G01625.1; Asa4G04440.1; Asa4G04446.1; Asa4G04449.1; Asa4G04451.1; Asa4G04481.1; Asa5G05828.1; Asa8G01235.1
Arabidopsis thaliana	AT1G13080.1; AT1G13100.1; AT3G26150.1; AT3G26160.1; AT3G26180.2; AT3G26220.1; AT3G26230.1; AT3G26270.1; AT3G26280.1
Oryza sativa	LOC_Os12g32850.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00067.19	p450	Domain	36	479	296.9	2.2e-88

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20617	CYP71A; cytochrome P450 family 71 subfamily A	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network