result

Gene information

Detail information of g205533

Location

Gene	Chr	Start	End	Strand
g205533	Scaffold_51637:HRSCAF_434723	52114	53780	+

Sequences

CDS

Protein

Gene

>g205533.t1
ATGGGACTAAGAGAAATCGAGTCACATCTACCACCTGGTTTCAGGTTTCATCCAAGTGATGAAGAACTAATATGCCATTATCTCTTCAAGAAGGTGAATAATGAGAGAAATGATGAAGGAGCAATGGTCGAAGTGGACTTGCATACAAGCGAGCCTTGGGAACTTCCTGGTGAGATTTATATTCTGTGTCTATATATATATATGTAGACACACGCACTCAATTACATGTTAGTGCTCTCTTTTCAATGTTATAGTTTCTCAACTCTATATGTTATCTACTCCTTCTTCTAACTTTCTTTTTCTAGTTCAACTTTCAGCGCTAAAAGAGCTGAGGGCTGAAAGCATGTGTTTTAGCTATAAATGATTCTATTTAATCTTCCAGTGTTTACCATGTTTCTTTTATAAAGTAACTTTGAATCTTTAACAAAGTTGTGCCGTTATGGGCAATAGTTTTTAACTGTGTAATTTACATATACCCTCAGAAGTGGCGAAGGTAAGTGAAAATGAATGGTATTTCTTCAGCTTCCTGGATCGTAAGTATGCAACTGGCATGCGTGCGAACCGAGCAACTAAATCTGGGTACTGGAAAGCTACTGGTAAAGATCGAATGGTCTACGATCCAGTAACACACACGCTCATAGGGATGAGAAAGACTTTGGTTTTCTATAGAGGAAGAGCTCCAAATGGAATCAAAACCGGCTTTGTCATGCATGAGTTTCGCCTTGGAAACAGCCATATGCCTCCTAAGGTACCATCCGCCTTCGACCTTTAAGCTCTACATAATTTCTTGAATGCATCATTTATTTTGTCACGGTTATGATACAAGGTTTTCAAAACGGGGTTCAAATGGTAGATTGGAAAGTTGGAAGTTTAAATTGAAACTTGAAAGTGGATTTGAACTGTACATCTTGAATTCAAATGAATCGCATTTTCAATGATCGCGTACTTGTATACTAGATATTTTACTGTATAGGTTACTGAATGAAATTGAAGTATGTAAAAGAATCGTTTAATAGTTTTGTGAATTTAAAACAGTTGTTAATGCTTGAGCTTCTACATCGAATCTAAAACTTAGTTTTCTTTCTTGTTTCGTTTTATTCTCTCTCAAAAGAGAAAATGAAATCTGAATTATGGATAAATAAAGTATCTTAGATATGAAAGTTCACTGGTTGAATGATATTTTTTTTCTTCTCAATTGCGTACTTAAGGGAGCTTATGATTGTAATTTAAGAATAGAATGGTAACTGGAAAAATTCAATTGGAAACGGAATTGAATTGGCAAGATTTTATTATTATTGATATGCTCGTTGTTCATTTAGTATCATCATGGTATGTCGCATATGGTTGTCGTATAACTTTATATGGTATGCTTAATATTATTATAGGAGAATTGGGTGCTTTGTAGAGTATGCCACAAAAGGAAAGGAGAAGTAGAGATGAACAATGAGTCATTCAACTCTCAACCTTTTATGGGAAAAGAAATCGAAAATTCAATGTTCGCAAATGGTGCACAGTCAAGTTCCTCATTTCCTGATATGAACAACTTAATGCAATGCAACTTTCTTGATTTCACACCTGAATATGCACAAGATTATGATTTGCCTTTTGATGTGGGGACTGAGGAAAATGCTATGCACTATGAAAATTTAGTAGATTTCAGCTATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	ARV85584.1	3.3e-78	NAC protein
Swissprot	Q9FRV4.1	5.4e-49	NAC domain-containing protein CUC1
trEMBL	A0A218L3K9	2.4e-78	NAC protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G28530.1	63.58	6e-61	230	anac074;NAC074	NAC domain containing protein 74

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g205533	AT4G28530.1	173	45	2	1	156	1	172	63.58	6e-61	230
g205533	AT3G15170.1	158	60	1	5	156	15	172	58.23	6e-50	194
g205533	AT1G56010.2	159	59	3	6	156	15	171	56.60	2e-49	192

Ortholog group

Species	Genes
Allium cepa	g10613.t1; g205533.t1; g297352.t1; g458732.t1; g523185.t1
Allium fistulosum	AfisC2G00051; AfisC2G01192; AfisC2G05337; AfisC2G05339; AfisC2G08061; AfisC4G04103; AfisC4G06621
Allium sativum	Asa4G01524.1; Asa5G05612.1; Asa6G01206.1; Asa6G02838.1
Arabidopsis thaliana	AT4G28530.1; AT4G28530.2
Oryza sativa	LOC_Os02g56600.1; LOC_Os04g43560.1; LOC_Os10g33760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	11	137	91.2	5.3e-26

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009790	P	embryo development
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009734	P	auxin-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0009933	P	meristem structural organization
GO:0009987	P	cellular process
GO:0010014	P	meristem initiation
GO:0010016	P	shoot system morphogenesis
GO:0010033	P	response to organic substance
GO:0010072	P	primary shoot apical meristem specification
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0048507	P	meristem development
GO:0048508	P	embryonic meristem development
GO:0048527	P	lateral root development
GO:0048528	P	post-embryonic root development
GO:0048532	P	anatomical structure arrangement
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071365	P	cellular response to auxin stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0090421	P	embryonic meristem initiation
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network