result

Gene information

Detail information of g223284


Location
GeneChrStartEndStrand
g223284Scaffold_53939:HRSCAF_437025871005875005+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010914895.11.2e-42transcription factor HY5
SwissprotO24646.11.7e-25bZIP transcription factor 56
trEMBLA0A6I9QT858.5e-43transcription factor HY5

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G11260.164.671e-44 175HY5;TED 5Basic-leucine zipper (bZIP) transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag110718.t1; g223284.t1; g356095.t1
Allium fistulosumAfisC1G01421; AfisC7G02854
Allium sativumAsa7G01379.1; Asa8G00299.1; Asa8G00300.1
Arabidopsis thalianaAT3G17609.1; AT3G17609.2; AT5G11260.1
Oryza sativaLOC_Os06g39960.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00170.18bZIP_1Family8214355.24.9e-15

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001012FRNA polymerase II regulatory region DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001101Presponse to acid chemical
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007154Pcell communication
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009605Presponse to external stimulus
GO:0009606Ptropism
GO:0009628Presponse to abiotic stimulus
GO:0009629Presponse to gravity
GO:0009630Pgravitropism
GO:0009639Presponse to red or far red light
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009740Pgibberellic acid mediated signaling pathway
GO:0009755Phormone-mediated signaling pathway
GO:0009787Pregulation of abscisic acid-activated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009958Ppositive gravitropism
GO:0009966Pregulation of signal transduction
GO:0009987Pcellular process
GO:0010017Pred or far-red light signaling pathway
GO:0010033Presponse to organic substance
GO:0010099Pregulation of photomorphogenesis
GO:0010114Presponse to red light
GO:0010218Presponse to far red light
GO:0010224Presponse to UV-B
GO:0010468Pregulation of gene expression
GO:0010476Pgibberellin mediated signaling pathway
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010646Pregulation of cell communication
GO:0044212Ftranscription regulatory region DNA binding
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0023051Pregulation of signaling
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031537Pregulation of anthocyanin metabolic process
GO:0031539Ppositive regulation of anthocyanin metabolic process
GO:0032870Pcellular response to hormone stimulus
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0042752Pregulation of circadian rhythm
GO:0042753Ppositive regulation of circadian rhythm
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048518Ppositive regulation of biological process
GO:0048580Pregulation of post-embryonic development
GO:0048583Pregulation of response to stimulus
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071214Pcellular response to abiotic stimulus
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071370Pcellular response to gibberellin stimulus
GO:0071396Pcellular response to lipid
GO:0071478Pcellular response to radiation
GO:0071482Pcellular response to light stimulus
GO:0071489Pcellular response to red or far red light
GO:0071495Pcellular response to endogenous stimulus
GO:0080090Pregulation of primary metabolic process
GO:0080167Presponse to karrikin
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:1901363Fheterocyclic compound binding
GO:1901419Pregulation of response to alcohol
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000026Pregulation of multicellular organismal development
GO:2000030Pregulation of response to red or far red light
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0104004
GO:0140110
GO:1905957

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K16241HY5; transcription factor HY5EC:- Circadian rhythm - plantko04712

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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