result

Gene information

Detail information of g232957

Location

Gene	Chr	Start	End	Strand
g232957	Scaffold_55210:HRSCAF_438296	253206	259791	-

Sequences

CDS

>g232957.t1
ATGCGATGGAGCTTAGTAGACGAGCCAGATGATGAAGATGTATTACACCTGTCCATTTATTTTATCCATCATCTTCTCCACTCTCCGCTTTCCCAAAACTCAGATCCAAACCCTTCTTTTCCCTTCTTCGAAATGTCGATATGGAGCAACTCACTAATCAATCGCGAGCTCTCAAAACGCACGTCTGTCTTCAACCTCCGCCTCTACGTCGTCATCGGCGTCGTCGCCGGCGTCGTCTTCGTCCTCTTCCTCTTCGTCCTCTCTCTGTGCTGCTGCTCCTCCTCTTCCTCCAAGAAAAAGTCCAAGAAATCCAGACTCGAACCAAACTTAGCAAAAAATACCGATCAAAATAAGGTCTTGCAGCAGCAGCAAACAGTTCAAGCAACGCCATTGAAGCCGAAAGATTTGATTTTGGACATAGAGTCAGGTGAAGGAGCTGAGAAAGTGGAGGAGAAAGTTGCTCCGCCACCGCAGGTGCAGCCAAAAGTGTCGCACTTGGGATGGGGGTGCTGGTACACGTTAAGAGAGATTGAAAAGGCCACGAATGGGTTGAGTGAAGGGAATGTGATTGGTGAAGGTGGTTATGGCATTGTTTATAAAGGTGTTTTGGTTGATGGAACTGAAATTGCTGTCAAGAATCTGCTAAACAATAAGGGTCAAGCAGAGAGGGAGTTTAAAGTAGAAGTGGAAGCAATCGGAAGAGTCAGACATAAACATCTAGTCAGGCTACTTGGATACTGTGCCGAGGGTGAATACAGAATGCTTGTTTATGAATATGTCGACAATGGCAACCTTGATCAATGGCTCCATGGAGAAGTAGGCGATGTTAGTCCACTCACATGGGAAATTCGAATGAATGTTATACTTGGAACTGCGAAAGGCTTAGCTTATCTTCATGAAGGCCTTGAACCAAAAGTTGTGCATCGAGATGTAAAAGCAAGCAATATACTCCTAAATCAGCAGTGGAATCCTAAAATTTCTGATTTTGGCCTTGCCAAACACTTGGGTTCTGAGAAGACTTATGTCACCACTCGTGTTATGGGAACATTTGGTTATGTAGCACCTGAGTATGCTAGTACTGGAATGTTGAATGAGAGAAGTGATGTGTATAGCTTTGGTGTACTAATCATGGAAATAATCTCAGGAAGAACTCCTGTGGATTATAGAAGACCACGAGATGAGGTACACTTGGTAGAGTGGCTAAAACTCATGGTTGGGAATAGAAGATCTGAAGAAGTATTGGATCCTAAGATCTTAAAAAGGCCATCTCCAAAGGCACTAAAAAGAGCCCTATTAATAGCACTTAGATGCGTGGATCCCGATTCTCATAAGAGGCCCAAAATGGGAAACGTGGTACACATGCTCGAGATGGACAACATTTTGTTTGGTGAAGGAAAAAGATTAGAGGAACATGCATCCGTCTCTCACCCTAGCAGTCATTCAAATGACAGAAGGCCAGTGACCAGATATAACTGA

Protein

Gene

>g232957.t1
ATGCGATGGAGCTTAGTAGACGAGCCAGATGATGAAGATGTATTACACGTACTTGATTATATTTCGCTGTGTATTGTAAGCTGTATAGTCAGCACTAGCGATGACAAGTTATTCTAACTGTCCAGTATTGAGTTATTGATTGTTTGTATTCTGATGGTGTAATATATAAATAATAATTATAGTTCTTTTTGTATAAAGACATGTTAGTATCTATTATATATTGTTCCGCTGCGATTGTGAGATTCTGTGCCGTTATTTCTGTTTTCTTCTACCTCTTCATTTTCTTTTCCCCTAACTATCAGGTTTTTTTACGTTCCATTGCTCGGCATGTAATATAGTGGATATATTAGTGTCGATTTTCGAGAGTCGAAAATCCCGTCTGTAACCCCATGAATAGAAATAAACATAATCAATTTATTATGAGAAGAAAAAAATGATACTACATAGTAGCGTTACTTCAAATTATTTTCTTGTTCTTCAATTTGTTGTTTCTTCCTCAATTTGCTGTTTCTTCTCTCAAACAACAATTTCACCACATCGTTGCTTCCATCAGAGTTATCTTTTCTTCATTCTTACTCGCCGCCGCCGTATCGGCAAAGGACTTTGGCCCACGTTTCTCAAATCCCTAGCCGTTTGTCGTGATCTGCCATCACACCAACCTCCGTCGACGCCAACTTCATAGCCAACCCCATCGAGACAGCATCATCATTAAAGGAGTTGAGAAACTCCTTCATTGTCTAGATTCATTGCTTGACCTTGTCCTTCTCATTAAAACTCCTTCTACGACAATTAGTTGTAGAATTTGTCATCCATGCTAAAAAATTGAAAGTCGATACTGGAAGCTAAAAACGTGATAAAATTTATCTTTCGTGCTATTTTCCTGAAATAATAATTTGTATAATTCAACCTTTGAAATTTACATGGAAATTTTAGATATTACTCGGTTTAAAAACGAATTTTGGCTTTTCTGTTTTCAAATATATATGTCAAATGTAAAAAAAGTGAAGTGATGACGGATGTGATGGAAGGACGACGAAATGATAGACTATTTATCGTGCTTCTATTATTTTTGAAAACAAAAAAAAAAAATTGTTTTCTATTTTTTATGTGAATTTTATTTTATAAATTGATAGTTTTCGATAATATATATGCATCTTCTGTCATTTATATAGACAAAAACTTAAAACTAAAAATACAAACAAACGCACTTTTATTTTGCGGAAAAATCTTTGGCAACTTGCCAATTGGAAATAAATAAAAGGCTTTGCACCGAAGGTCCTATTTTCGATGTTGTTGTAAGAAAAGTCGCTATGATAATAATGATGTAAATTAAGTTCCTGTTTTTTGTAAATCAGAAAGCGCAAACTATCTTGCGCTTTTCTTATAAAAATGCAAGTCAACTTGCGCTTTTCAAAAATTTAAATTTTTTTGAAAATTTCAAAATAAAAAAGCGCAAACTAGCTTGCGTTTTTCTGATAAAAGTTGCAAGTTAGCTTCCACTTTCTGTCAGAAAAGTGCAAAACACCTTATGTTTTCTATTTTTAAAAAAATAGAGACTAAATTTACATACTTATATATATATTTATATATCAGGAAAATAGGCAAAAGGAAAAAGTTCCAAAAAAATTTAGTCTCAAGTACAGCAAGTTTGTTTTTTGGTCTGAAGGACACTTTATAGTGTAAACAGAAAATGATAGTTACAACTATCATTCTGTGATTTACACTATAAAGTGTCTTTCAGACCAAAAAACAAACTTGCTGTCTCTCAGACTAAATTTTTTTGCTAGTTCTTCCTTGTGCCTAAGAACCCCATATATACATGCACTTGTTTTGAAAAATAACGCAAGTTCATAACGGCTAAAACTTATCCTTCCTCTCTTTTTCTAAGTTCTCTCTCTTCCAAATCCAATAGCAACAGACTGTACACAAAAGTACACACAAACAAAGCAAAAGTAAACAGCTGTCCATTTATTTTATCCATCATCTTCTCCACTCTCCGCTTTCCCAAAACTCAGATCCAAACCCTTCTTTTCCCTTCTTCGAAATGTCGATATGGAGCAACTCACTAATCAATCGCGAGCTCTCAAAACGCACGTCTGTCTTCAACCTCCGCCTCTACGTCGTCATCGGCGTCGTCGCCGGCGTCGTCTTCGTCCTCTTCCTCTTCGTCCTCTCTCTGTGCTGCTGCTCCTCCTCTTCCTCCAAGAAAAAGTCCAAGAAATCCAGACTCGAACCAAACTTAGCAAAAAATACCGATCAAAATAAGGTCTTGCAGCAGCAGCAAACAGTTCAAGCAACGCCATTGAAGCCGAAAGATTTGATTTTGGACATAGAGTCAGGTGAAGGAGCTGAGAAAGTGGAGGAGAAAGTTGCTCCGCCACCGCAGGTGCAGCCAAAAGTGTCGCACTTGGGATGGGGGTGCTGGTACACGTTAAGAGAGATTGAAAAGGCCACGAATGGGTTGAGTGAAGGGAATGTGATTGGTGAAGGTGGTTATGGCATTGTTTATAAAGGTGTTTTGGTTGATGGAACTGAAATTGCTGTCAAGAATCTGCTAAACAATAAGTTAGTTTTTAACATATCTTTTTGTTTATCATTACCATTTAATGATTGTTTACTGTTTGTTGAAAGATGCAAACCTTGATTTGATACTCAATTTTGAAGAAGACCAAGCAAGAGAAAAATCAAGTATTTTCATTCAGTTTTACATATCATGGCTGGTGAAGCAATACTGTACTCAACCTGAAAATTTAATTCTTCTTGCTTTATAAAAAAAACAAAAAAAACAAAAAACAAAAATCATATTATGTAGGTAAACAATAATATGGCAGAAAGATTTATATGTTTTGACATTGGAAGGATCATTTACCTTACAGTGTGGATCTATAATTCAAGCAACATTTCAAATATAGTGAATTTTAAAAATATTCTTTTTGATAATTAAGTTGACTTGATCAGTACATATAAGTGGCTGAATCATTTTGTTCCTGCATTTTCGTATTGTTTATTTACAAAATGGATCTTGCATATTCCCTGACTAGCAAGTAACATTAGGATTTGATATTTAATTATCAACATTGGTTTCCTGTGCATTTAGCATGCTAAGGTAAAAATTTACTTTAGGCCATTTTATTTTTTGATTTAACAAAATATAAAGCTTTAATCATATCTAACTGGAGATGGATGCAATATAGGCTTTTTTTTTAAATGGAGATTCAATTAGAGACTAACATCTGACTGCATGTTAAAAAATAGCGGTAAGGCTACAACTATATTCTATATTCTAACTCTAATGGATGTTAAATGACAACTTTATACTTGCTTTTAATCAGATCATTGCTACCAAAGGATATGCATAAACTGCGAGAATAAAAATTAAATCATATAGTATCCAAAATTTCTTCCTTTGTTGAAGAAATAATAGAACGATTCAGTCCAACACCACTATTCTAGTGGTTAGGCACGCCGGCTTTGGTCCATGATGTTCGAGTCCATTATAGCATGAGTCAAACCATTGAACATATGTTGACTTATAGTATGTTATATACTACATAAGATTTGTAGTACAACCATATACTACCACATGAGTACCCAATTTCAGAAAAAATAAAACAATTCCAATCTAGAAAAAATAAACTTGATGTTTTATGCATATCTCGAAATATTAGAACTCATCAAATTTGGATACTTTTAATAGAAGGCATTTTATTATCTAATATTTCGGTCTTTTTGTTACTGAAATCATATTACACTGACAATATTTCTTTTTTGTTTCATACCAAAGTTTGGCATAATGCATACTTTGTTTTTATATATTTATACAATTTGTGTGACATTGAAACATTTTTTGTATTATTACTTTCTGATTTATATGAGGTAAGGCTTTTCAATTTTATTTTTAGTAGCATTGCACCTGCACCTCCTCTGGAGTAAAGAAAAATGAATTTGCCTCTATACTACTAAAATTTACACAAGAGCACAAAAAGTTAGAATAGACTTGCTTTGATACTAATATAATCAATTTTACATTTTCCATATTTTTCCCTTTAGATGACAAAAAGTCTTTGGCAAACCAAAAACATTAGTTTTTTTCATTCATCTAAGATACTAAAATGTACTAAAAATTTGTAGTTACATTTTATCATCCAAGATACTAAATGTGCAAAAAACATTAATGTTATATTACATTTTATAATCAAGCACTAGAATTTTATTAGGGGTCAAGCAGAGAGGGAGTTTAAAGTAGAAGTGGAAGCAATCGGAAGAGTCAGACATAAACATCTAGTCAGGCTACTTGGATACTGTGCCGAGGGTGAATACAGGTTTATTGCTTAAAGTTAAGTTCATAAATTCACACAGAATTTCATTTCAAAAATGTATTGAATCTTTGTTTATATGTATGTTCTTGTTAGAATGCTTGTTTATGAATATGTCGACAATGGCAACCTTGATCAATGGCTCCATGGAGAAGTAGGCGATGTTAGTCCACTCACATGGGAAATTCGAATGAATGTTATACTTGGAACTGCGAAAGGGTACATTTGGATATTTATGTTATAATTTTACTCATATCTCCATTCAATGCGTGGTTAATAAAACTTGTGATTTGCAGCTTAGCTTATCTTCATGAAGGCCTTGAACCAAAAGTTGTGCATCGAGATGTAAAAGCAAGCAATATACTCCTAAATCAGCAGTGGAATCCTAAAATTTCTGATTTTGGCCTTGCCAAACACTTGGGTTCTGAGAAGACTTATGTCACCACTCGTGTTATGGGAACATTTGGGTCAGTTTAACAATTTTAGAACAAGCCTCTATCTCTGTATCTTTTAATACAAAGCTATGTAGAATCAACTCCATTTTATTTTGAAAAAAATAGAGCTTATAGCAAAGAAATGACGAACCGTTTGAGTTCCACTTCGATACAAATTTATGTCAGAACATTGATAAGTAGACATATTATCCTTTGTTTTCTCAAACCCTTTTAAAAAAGGACGTTTTCTCAAACCCTTTTAAAAAACAGGTTTCATGAAACACCCCTCTAATTATTTTTAACGAAAATATACAGTCTATACTGTAAATATTTATTTTTCAAAAAATTGCAGTGTAGACTGCATTTTTTTGAAAATAATTACATTGGTTTTTCGTGAAACGTTTTTAGGAAAGGGACTGAAGTGAATTTTGAAATTTATGAAGGGTGTTTGAGAAAACGTCCTTTTTTATGATTTTATCACTTTGTAAAATACGTATAAATATGTGTGGACTAACTTATTTGGTAATCACACAGTTATGTAGCACCTGAGTATGCTAGTACTGGAATGTTGAATGAGAGAAGTGATGTGTATAGCTTTGGTGTACTAATCATGGAAATAATCTCAGGAAGAACTCCTGTGGATTATAGAAGACCACGAGATGAGGTCCCTATCTTCTTATTTGTATTATAATTTATAATACATACAGATGTTTTTACATTACCTCCTTTCAAATTAATCTAGGTACACTTGGTAGAGTGGCTAAAACTCATGGTTGGGAATAGAAGATCTGAAGAAGTATTGGATCCTAAGATCTTAAAAAGGCCATCTCCAAAGGCACTAAAAAGAGCCCTATTAATAGCACTTAGATGCGTGGATCCCGATTCTCATAAGAGGCCCAAAATGGGAAACGTGGTACACATGCTCGAGATGGACAACATTTTGTTTGGTGAAGTAAGTCGTTTTTCTTATTCACTGTACACAAATAGAAAGTTTAAGGTTCATTCTTGGCAAATGAACATCAGAAGTGATTTTTCCAAGCTTACTTCAAACATAAATTTTCCTTTTTTTAGTCTCACATTGGGACATTAAATGTAGCGTGATCTGCATAAGATATATCACTTTCTATAGTGTCATTTATTTTTTTACTTAAGCGCTCATATAGACATGAGCGTTCAAATTTATGCCTATTAAATATCCAAAAATTCGAGTTTTGCCCGAATGCCTTGGTCAAATGCACATGAAATGCTTAAATGTCCACATTTTTAGTTCAAAATATACCTAAAGTGAAGATATGTTGAGAACAGTCTCAAACAACTTAGATAAATATTTATCTTATACTGTTAAATATTCGCCAATAATAGGATCTTTGGAATGTCGCAATACCATGATTTTCATTTAGTATTAGTTGAAATATAGACTTATGGTAGGTAGTATGGCTAGATAGAAAAATATTTTTTTTACTGCATACTCCTAAATTGGTTGCTAAATCATCAATACCAGTTATTTGTTTATTCATACATTCTATTTTCTATCATTTATGTTAAGCTCGACATATCATGGTGGGCTTTTTTTCCTTATCAATTATGTTAATAACCTGTGTATTTTCTTTTTCTTCGTTTTAAAATAACTCTTTTTGATGGATAATTTGTGATGCCATCTTTCCTTGTGCTCAGTTTAAAAATGAGTAATGAATACAGTAGTTCTTCTTATTATCTAGAAATAAACTAATTGTTATTAATGAATACACACAGGGAAAAAGATTAGAGGAACATGCATCCGTCTCTCACCCTAGCAGTCATTCAAATGACAGAAGGCCAGTGACCAGATATAACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246311.1	6.0e-167	probable serine/threonine-protein kinase At1g01540
Swissprot	Q3EDL4.2	2.6e-151	Probable serine/threonine-protein kinase At1g01540
trEMBL	A0A5P1FQD5	4.4e-167	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G01540.2	62.72	2e-162	569		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g232957	AT1G01540.2	448	144	7	45	473	1	444	62.72	2e-162	569
g232957	AT4G01330.1	450	149	4	45	473	3	452	62.22	6e-159	557
g232957	AT4G01330.2	451	149	4	45	473	3	453	62.08	9e-159	556

Ortholog group

Species	Genes
Allium cepa	g209551.t1; g232957.t1; g333584.t1
Allium fistulosum	AfisC1G07885; AfisC2G08242; AfisC4G04968; AfisC5G00127
Allium sativum	Asa5G04259.1; Asa6G01043.1; Asa6G06878.1
Arabidopsis thaliana	AT1G01540.2; AT4G01330.1; AT4G01330.2; AT4G02630.1
Oryza sativa	LOC_Os02g34430.1; LOC_Os03g03410.1; LOC_Os04g35080.1; LOC_Os05g36050.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	186	453	161.6	2.1e-47

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0046777	P	protein autophosphorylation
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network