result

Gene information

Detail information of g235753


Location
GeneChrStartEndStrand
g235753Scaffold_55587:HRSCAF_4386731789418385-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020273353.11.6e-39bZIP transcription factor 39-like
SwissprotQ6AU90.12.0e-34bZIP transcription factor 39
trEMBLA0A6I9QJA67.2e-34bZIP transcription factor 39

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G40950.153.593e-30 127BZIP17Basic-leucine zipper (bZIP) transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag116473.t1; g146831.t1; g146832.t1; g17473.t1; g235753.t1; g235754.t1; g424859.t1; g458181.t1; g58469.t1
Allium fistulosumAfisC1G07456; AfisC5G02606; AfisC5G02607; AfisC6G06399
Allium sativumAsa4G04579.1; Asa7G06169.1; Asa7G06170.1; Asa8G00330.1
Arabidopsis thalianaAT2G40950.1; AT3G10800.1; AT3G56660.1
Oryza sativaLOC_Os05g34050.1; LOC_Os07g44950.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
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Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006986Presponse to unfolded protein
GO:0016020Cmembrane
GO:0007165Psignal transduction
GO:0005783Cendoplasmic reticulum
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005635Cnuclear envelope
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0005789Cendoplasmic reticulum membrane
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006972Phyperosmotic response
GO:0006990Ppositive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0007154Pcell communication
GO:0008150Pbiological_process
GO:0009266Presponse to temperature stimulus
GO:0009408Presponse to heat
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0012505Cendomembrane system
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0033554Pcellular response to stress
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0030968Pendoplasmic reticulum unfolded protein response
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031967Corganelle envelope
GO:0031974Cmembrane-enclosed lumen
GO:0031975Cenvelope
GO:0031981Cnuclear lumen
GO:0031984Corganelle subcompartment
GO:0034620Pcellular response to unfolded protein
GO:0034976Presponse to endoplasmic reticulum stress
GO:0035966Presponse to topologically incorrect protein
GO:0035967Pcellular response to topologically incorrect protein
GO:0042175Cnuclear outer membrane-endoplasmic reticulum membrane network
GO:0042221Presponse to chemical
GO:0042538Phyperosmotic salinity response
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044425Cmembrane part
GO:0044428Cnuclear part
GO:0044432Cendoplasmic reticulum part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0048471Cperinuclear region of cytoplasm
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071310Pcellular response to organic substance
GO:0080090Pregulation of primary metabolic process
GO:0098827Cendoplasmic reticulum subcompartment
GO:1901522Ppositive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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