result

Gene information

Detail information of g239797


Location
GeneChrStartEndStrand
g239797Scaffold_56109:HRSCAF_439195768717800939+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020589224.13.4e-299casein kinase 1-like protein HD16
SwissprotQ852L0.12.3e-271Protein HEADING DATE 16
trEMBLA0A6I9QHG08.0e-298casein kinase 1-like protein HD16

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G03940.175.810.01099Protein kinase family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag101413.t1; g238377.t1; g239797.t1; g239963.t1; g246407.t1; g448615.t1; g499651.t1
Allium fistulosumAfisC1G03548; AfisC1G07200; AfisC4G02999; AfisC5G01364; AfisC5G03189; AfisC8G00822; AfisC8G00978
Allium sativumAsa1G04052.1; Asa1G04192.1; Asa2G07502.1; Asa4G04103.1; Asa7G05319.1; Asa7G05897.1
Arabidopsis thalianaAT2G25760.1; AT2G25760.2; AT3G03940.1; AT3G13670.1; AT5G18190.1
Oryza sativaLOC_Os01g10150.1; LOC_Os01g10150.2; LOC_Os01g54100.1; LOC_Os01g54100.2; LOC_Os01g56580.1; LOC_Os01g56580.2; LOC_Os03g57940.1; LOC_Os03g57940.2; LOC_Os03g57940.3; LOC_Os03g57940.4; LOC_Os05g11140.1; LOC_Os05g11140.2; LOC_Os05g11140.3; LOC_Os07g07560.1; LOC_Os07g07560.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain14137662.92.7e-17

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0004672Fprotein kinase activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0007623Pcircadian rhythm
GO:0008150Pbiological_process
GO:0061136Pregulation of proteasomal protein catabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009894Pregulation of catabolic process
GO:0009896Ppositive regulation of catabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0030162Pregulation of proteolysis
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031329Pregulation of cellular catabolic process
GO:0031331Ppositive regulation of cellular catabolic process
GO:0032268Pregulation of cellular protein metabolic process
GO:0032270Ppositive regulation of cellular protein metabolic process
GO:0032434Pregulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032436Ppositive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032501Pmulticellular organismal process
GO:0032922Pcircadian regulation of gene expression
GO:0036211Pprotein modification process
GO:0042176Pregulation of protein catabolic process
GO:0042752Pregulation of circadian rhythm
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045732Ppositive regulation of protein catabolic process
GO:0045862Ppositive regulation of proteolysis
GO:0048511Prhythmic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051247Ppositive regulation of protein metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:1901564Porganonitrogen compound metabolic process
GO:1901800Ppositive regulation of proteasomal protein catabolic process
GO:1903050Pregulation of proteolysis involved in cellular protein catabolic process
GO:1903052Ppositive regulation of proteolysis involved in cellular protein catabolic process
GO:1903362Pregulation of cellular protein catabolic process
GO:1903364Ppositive regulation of cellular protein catabolic process
GO:2000058Pregulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:2000060Ppositive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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