result

Gene information

Detail information of g241355


Location
GeneChrStartEndStrand
g241355Scaffold_56304:HRSCAF_4393904686450403-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrTMX05545.11.7e-53hypothetical protein EJD97_016652
SwissprotP26307.13.2e-36Regulatory protein viviparous-1
trEMBLA0A6N2CEG91.3e-53TF-B3 domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G24650.143.045e-44 176ABI3;ABI3;SIS10AP2/B3-like transcriptional factor family protein

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Ortholog group
SpeciesGenes
Allium cepag241353.t1; g241355.t1; g470921.t1; g470925.t1; g504021.t1; g504022.t1
Allium fistulosumAfisC1G00220; AfisC1G00221
Allium sativumAsa7G00673.1; Asa7G07411.1; Asa7G07412.1; Asa7G07414.1
Arabidopsis thalianaAT1G28300.1
Oryza sativaLOC_Os04g58000.1; LOC_Os08g01090.1; LOC_Os08g01090.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02362.18B3Family39948649.92.1e-13

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005829Ccytosol
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006996Porganelle organization
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009790Pembryo development
GO:0008150Pbiological_process
GO:0009657Pplastid organization
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009737Presponse to abscisic acid
GO:0009791Ppost-embryonic development
GO:0009793Pembryo development ending in seed dormancy
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010154Pfruit development
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0023052Psignaling
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031930Pmitochondria-nucleus signaling pathway
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0048316Pseed development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K01653E2.2.1.6S, ilvH, ilvN; acetolactate synthase I/III small subunitEC:2.2.1.6 Butanoate metabolismko00650
C5-Branched dibasic acid metabolismko00660
Valine, leucine and isoleucine biosynthesisko00290
Pantothenate and CoA biosynthesisko00770

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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