result

Gene information

Detail information of g241890

Location

Gene	Chr	Start	End	Strand
g241890	Scaffold_56379:HRSCAF_439465	332577	336794	+

Sequences

CDS

Protein

Gene

>g241890.t1
ATGAAACAGTATCTCCATCTTGTCTTCTTACTATTCTCCATCACCTACAAAACAAAAGCATTGACTTCTGAATCAGATGCATTGCTTACATGGAAAGAAGGTTTATTCCAATCTGATTCATTATCATCATGGAAAAAATCCACAAACCATTGCAAATGGTTTGGCATCAAATGCAATTCACAAGGCAGCATTATAGAGTTAAGTCTGCCTAGTGCTAATCTTGAAGGCAGTCTTTATGAGTTAGATTTTACAGCTTTGGCTAACTTAACTCTTCTTGACCTCAACAACAATGGGTTCCAAGGAGCCTTCCCTTCGAGTATTTCAGCGCTTTCTAAGCTTGTTTCTCTTGACATTGGCATAAACAACTTCACTGACTTGTTGCCACCTGAAGTTGGAAATCTTTTTGAAATTGTTGATCTCAGACTTTACAGTAACGCCTTTTATGGTCCGATTCCTCATCAGCTCAGTAGTCTTACTAAGGTGCAGCATTTTGATCTTAGTCTTAATCATTTTGAAAATCCGGACTACTCAAAATTTAAGCCTATGCTATCACTTAAAAATCTTTTACTTTACGATAACGATTTAAGTCTTGACTTCCCATTGTTCATATTGAATTGTACGAATTTGACGTACATAGATCTGTCTATGAATCATCTTGCTGGTACGATACCGGAGTCCTTGACAAACTTGGTTCAACTTGAATATTTGAACTTGAATGCAAACTTATTTCAAGGGCAAATACCTGAATTTTTAATGGAATTTTCGAATTTGAAAGGTCTTCAAATTGCAACTAACAATTTCACTGGAGGAATACCTCCGTTCATTGGATCGATGTCTAGTCTTCAAATACTTGAATTCTATGAAAATCCGTTAGGTGGATCAATTCCTTCTTCATTAGGCAATTTGAAGAAGCTTGAAAAACTTGATATCAAAAAAGCTAATCTGAACTCTACTATACCAAATGAACTTGGATTTTGCACAAAACTTAACTATATCGAACTGTCCAAAAATCAGCTTTCAGGTAATTTGCCATCTTCTTTTGTAAACCTTACTGAAATGAAAGAATTTGGCATCTCGGAGAATTTTCTTTCTGGGTCAATTTCATCAAAAATATTCAGCAACTGGCCTAGTTTAATTTCCTTTCAAGTGCAAAACAATTCATTTTCAGGGAATATCCCGAAAGAGATTGGATTTATATCAGAACTGAAATATATTTTTCTCTTCAGTAACAATCTAACTGGTTCAATTCCAGTGGAGATCGGAAATTTGGTTAATTTACTCAAGTTAGATTTCTCAGACAATTCACTTTCTGGTTCAATTCCGTTGACAATAGGAAACCTTACTAAGCTATTAGTACTCAATTTGTCCAATAATATACTTACTGGTACAATTCCACTAGAAGTTGGTAACATGAAATCATTGACAGGTTTCGATGTTAACACGAACCAACTAGAAGGTGAACTACCAAGTACGATTTCTCAACTTGAAAAACTTGAGAATTTTCAAGTGTTTACCAATAATATGACTGGCAAAGTTCCTGAAGATTTTGGCAAGCATGGGAGTTTAACAGCTGTAGGTTTCTCAATCAACAGCTTTTCAGGTAAATTACCATCAAAACTTTGCAGTGGTTTTGCCCTTGTAAATTTAACAACAAATGGAAACAACTTCTCTGGACCTTTGCCTAAATGCTTGAGCAAATGCAATAAACTATGTCGAGTCAGATTAGAGATGAACCACTTTAGTGGTGACATATCTGAAGCGTTTGGAGTTCATCCAAAGCTAGTTTATTTGGATCTCACTGGGAATGAGTTGACTGGAACGCTTTCATCGAATTGGGCACAATGTGAAAGTCTTCAATTGCTGCATTTAGATGGAAACAGCATTTCTGGAAATATTCCTCCAAGTTTCGGTAAATTATCCAATTTAACAGATTTGAGCTTGTCTCGGAACTTCTTTTCAGGTACAATTCCTCCGGAGCTTGGAAATTTGCAGATGATGTATAAACTGAATTTGAGCAATAATCTGCTATCGGGAGAAATTCCATCGAATATAGGAAATATCTCATTGTTAGAAGATCTTGATTTCTCATCAAATAAATTAAATGGCAACATACCATATCAGTTGGGCAATCTGCAAAGAATCCTTTTGTTGGATTTGAGTCAGAATTACTTATCAGGAATTATACCAAATCAACTAGGTAATCTCGGCACATTGCAAAAACTAATGGATCTAAGTAGCAATTCTCTGTCTGGTTCGATCCCATCTAATTTTGTGAAGCTGACATCATTGTTTAAAGTTTAAACTCAACCTATCTCATAATAGTCTCTCCAGTAACATCCCTAGTGTGTTGTCGCAACTCCCTGCCCTAGATACAGTGGATTTCTCATACAATAACTTAACTGGAGAGATTCCTTCAGGCCATGCTTTTCAAAGTAATACCTCAAATTTTTCAGCAAACCCATGGCTCTGTGGAAATTTTAATGGTTTGTCACTATGTCAAGATTTTAAAACTACTAGTCACAACCACAAAAACCACACAAAGCTCATTATAGCCATTGTTACCCCAATCATAGCACTGCTACTACTAGCCTTCATAGTTGTTACAACAATTTTAGTGTGCAAGAAGAGAGAGGAAAAAGCAATTTTATTGGAAAGCATCAACGTTGAGAGTTTGGGGTCATTGATATGGGAGAAAGAAGGTAAGTTCACTTTCTACGATATCATGAACGCAACTGACAACTTCAATGAAGTATATTGCATAGGAAGAGGTGCTTTTGGGACTGTCTACAAAGCAGTGTTATTGAATGGGCAAATTGTAGCTGTGAAAAAGCTACACATGTCGCAACCAGACCAAATCTCTGAACCTATACGAAAAAGTTTTGAACATGAAATCAAGACTCTTACTGAAGTTAGGCATAGAAACATCATAAAGCTGCATGGGTTTTGTTCTAGAAATGGATCTATGTATTTGGTGTACGAGTACGTGCAAAGAGGAAGTCTAGGTAAAGTATTATATGGAGAAGATGCAGAGAAAATGTTCGATTGGGTGAAACGAGTTAGAGTGGTTCAGGGAGTGGCTCATGCTTTGGCTTATTTGCATCATGATAGCACACCTCCAATTGTGCATAGAGATTTATCTGTGAATAATATTTTGCTAGAGTCTGATTTTGAACCCCGAGTTGCAGATTTTGGAACTGCACGGATTTTGACTCCTGGAGTCTCAAATTGGACTGCCGTTGCAGGATCTTATGGATATATGGCTCCAGGTATTGATTAATTACATCCACTTTCTGTAACTGATATAGTTCTTAATTAGTACAAAATAGTGTGTATCAGATTAGTTGTTTGGTTTAGATTAACTTTGTTGGGACATCTTTATTTACTTTACTCGTATAAGCATTGTTGTTTCTTATAGAATGAGATTCATCATCCATGGTGCTAGAAACACTTTTTGTAAAAAGTTTGTATAAGCTAAATGCTAATCATTGGAGTAAACAAGGGCTACATGCTAGTCAGCTTTGTTAAAAAGGGCTAACTATCTAACATTTTACATGTCACAGTCCACGTTTATTTTTCAAATTTGCTAGAATGCCGAATCAAAATCTGACATTTTGTAGGAATAGAAAGAAGCATATGGGACCCTGTAATTTCCTCCTGCGTTTCATACCTTTCATTTTTTTTTTCACTTCCGGGCCCTGTAGCAAGCTCCTTTATTTTGTGTTAGGCTTTTTTTGAAAAGGGGTTGAACTTATGAAAACCATGTGCATGTGTGAAGTCATACGTAAATAAGAGATCGACAGAGAATAATACCTTCTAATTTATTTTATTCTTTTAAAAAAAATGCATACAGAACTTGCATACACAATGAAGGTCGCCGAGAAAAGTGATGTATACAGCTTTGGAGTAATAGCACTGGAAACAATAATGGGAAAGCATCCAGGAGAACTAATTACCTCCTTGCCATCGCTTTCAACCACTGAAGGAGAGGATATATTTCTTATAGATATATTGGATGAACGACTTGAACCACCAACTGGTCAATTAGCTGAGGAGGTAGTTTTCATTGTCAAAATGGCCCTTGCATGTGCTCGAAGCGATCCATCATCACGTCCAGACATGCGATTTGTAGCGCAAGGAATATCTGCAAGGACACAGGCTTATCTTCCTGAACCATTGCGTGCTATTACAATTGGCAAGCTTGCAAACTTCACTAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259713.1	3.6e-155	LOW QUALITY PROTEIN: MDIS1-interacting receptor like kinase 2-like, partial
Swissprot	Q8VZG8.3	1.5e-81	Probable LRR receptor-like serine/threonine-protein kinase At4g08850
trEMBL	A0A5P1F2V9	1.7e-151	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G08850.1	38.70	0.0	636		Leucine-rich repeat receptor-like protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g241890	AT4G08850.1	1031	521	18	3	936	29	1045	38.70	0.0	636
g241890	AT1G35710.1	1103	535	17	20	936	29	1120	33.64	8e-164	574
g241890	AT4G08850.2	933	473	17	3	838	29	949	37.62	2e-154	543

Ortholog group

Species	Genes
Allium cepa	g144862.t1; g241890.t1
Allium fistulosum	AfisC1G01793; AfisC1G01795; AfisC1G01799
Allium sativum	Asa7G00046.1; Asa7G02124.1; Asa7G02127.1; Asa7G02129.1; Asa7G07578.1
Arabidopsis thaliana	AT4G08850.2
Oryza sativa	LOC_Os10g02990.1; LOC_Os10g32990.1; LOC_Os10g33040.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	23	59	33.2	4.4e-08
PF00069.22	Pkinase	Domain	667	928	153.7	5.2e-45

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network