result

Gene information

Detail information of g246962

Location

Gene	Chr	Start	End	Strand
g246962	CHR1	275608646	275609698	-

Sequences

CDS

>g246962.t1
ATGTCTTTTAAAAATTTCAGTTTAGCTCTTGTATTAATATCAGCATTTTTCTTTCCATATGTCAACTCACTCTTTTTCAACATTTCACGTTTCGATCAAGAATCAAAATCTTTAATTGAACACCAAGGCGATGCATTTATCAGTGGTGGTAGAATCAAACTCACAAAGAACAGCATAGGCTCATACAGCACAGGCAGAGCTCTATACAAACAAGAAGTTATTTTGTGGGATGAGAAATCCGGAGAACTTATGGACTTCATGACGCATTTCTCCTTCGTAATCAAATGCGTAAATGGAAACTACTGCGGTGATGGCTTGACATTTTTCCTTGCAAAACACACTGCAACAATTCCTAAAGGCTCAGAAGGTGGCCTTCTTGCTTTATTTGCACCTCTAACTGATTTTAGCACTCCCGACAGTGGGGTTGTTGCTGTTGAGTTTGACACATTTAAGAATACATGGGACCGTTCCGCAAATCATGTAGGGATCGATGTCAACTCGATCGTTTCGGTTGCAAACATTTCGTTAAATAGTAGCATCAGTGACGGCCGAACCGCAAATGCATGGGTTACTTACAATTCAAGCACAAAAAATCTGTCAGTATTCCTGACATATGATAAAAATCCAATCCATAGAGGAAATTCCATACTCTCCTATAATATCGATCTAAAAGATGTTTTACCTTCACAAGTAGCAATTGGCTTTTCAGCTTCTACAGGTTTGTTTGCCGAGACACATGAAGTCATATCTTGGAGCTTCAGGTCTAGACTCAATGGAAAGACAGAGGATCCTAACAGCCATACAATTGCAGAAAGTCCAAAAAAGGCCGAAAGCCCAACAAAGGCGCCAGAAAAAGCACCAGCACCAGCGCCAGCACCAGAGAAGCCAAAAAGTCCTGAAGCTGGGGAAAGTCCAGAAATGTCGGAAAGTCCAGATAACACAGAAAAGCCAAAAAACGGAGATAGGATAGAAAACTCGGAGAATACAAACAAAAGCAATGTCGGACTAATAGTTGGCCTGGCAGCTTCAATCGGCGCAATACTGTTTCTCTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256658.1	2.1e-68	L-type lectin-domain containing receptor kinase IX.1-like
Swissprot	P81371.1	3.9e-40	Seed lectin beta chain
trEMBL	A0A5P1F8Z5	1.5e-68	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G10530.1	42.25	3e-34	142	LecRK-IX.1	Concanavalin A-like lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g246962	AT5G10530.1	258	132	9	6	257	8	254	42.25	3e-34	142
g246962	AT5G65600.1	232	136	4	21	247	33	263	38.79	8e-28	121
g246962	AT5G03140.1	234	139	7	26	251	32	257	33.76	2e-23	106

Ortholog group

Species	Genes
Allium cepa	g154243.t1; g246894.t1; g246927.t1; g246931.t1; g246962.t1; g246968.t1; g246986.t1; g341138.t1; g341140.t1; g405937.t1; g84023.t1
Allium fistulosum	AfisC1G00895; AfisC1G01572; AfisC1G01573; AfisC1G01574; AfisC1G01586; AfisC1G01587; AfisC1G01588; AfisC1G01591; AfisC1G01592; AfisC1G01594; AfisC2G04722; AfisC2G09526; AfisC3G00240; AfisC3G00265; AfisC3G04662; AfisC4G02333; AfisC4G05269; AfisC7G01923; AfisC7G02122
Allium sativum	Asa2G00404.1; Asa2G03863.1; Asa4G05690.1; Asa7G00078.1; Asa7G01452.1; Asa7G01453.1; Asa7G01454.1; Asa7G01455.1; Asa7G01457.1; Asa7G01465.1; Asa7G01468.1; Asa7G01471.1; Asa7G01473.1; Asa7G01475.1; Asa7G01478.1; Asa7G01482.1; Asa7G01489.1; Asa7G01490.1; Asa7G02070.1; Asa7G02071.1; Asa7G02072.1; Asa7G02073.1; Asa7G02076.1; Asa7G02077.1; Asa7G02156.1
Arabidopsis thaliana	AT5G10530.1; AT5G65600.1
Oryza sativa	LOC_Os01g57100.1; LOC_Os07g38250.1; LOC_Os08g03020.1; LOC_Os08g03090.1; LOC_Os08g03160.1; LOC_Os08g03170.1; LOC_Os08g03240.1; LOC_Os09g16540.1; LOC_Os09g16700.1; LOC_Os12g41540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00139.16	Lectin_legB	Domain	25	262	223.6	2.5e-66

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0002229	P	defense response to oomycetes
GO:0002239	P	response to oomycetes
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0005623	C	cell
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009893	P	positive regulation of metabolic process
GO:0010310	P	regulation of hydrogen peroxide metabolic process
GO:2000379	P	positive regulation of reactive oxygen species metabolic process
GO:0010726	P	positive regulation of hydrogen peroxide metabolic process
GO:0010941	P	regulation of cell death
GO:0010942	P	positive regulation of cell death
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051193	P	regulation of cofactor metabolic process
GO:0051194	P	positive regulation of cofactor metabolic process
GO:0051704	P	multi-organism process
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0098542	P	defense response to other organism

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network