result

Gene information

Detail information of g247636

Location

Gene	Chr	Start	End	Strand
g247636	CHR5	16443624	16450132	-

Sequences

CDS

Protein

Gene

>g247636.t1
ATGATACATCTCTTCCTATTCATTCTTTTTATACTCTTCCTTTCCTCCTCAACAAAAGCCAAAGACACCATAACCCCAACCTCCCCTCTACTGGACAACCAAACCCTGACCTCCTCCAACAGCAAATTCGCCCTGGGCTTCTTCAACCCACCCAACTCCAACAACCGCTATATCGGGCTCTGGTACAACCAAATACCCGACCCGGAAAAGGTTTGGGTCGCAAATCGAGCGAACCCGCTAATAAATTCATCTGGCACCCTTTCCATCTCCAAATCTGGAACCCTTATCATCAGCAACGTGACCTCAGGGGTGGTTTGGACATCGAACAGTACGGCCAAGCTGATCAATCCTGTAGCGAAACTGTTGGATAATGGGAATTTGGTGGTAATGGAAGATGGAGATGAATCGAATTATGTGTGGCAAGGATTTGATCATCCGACCGATACGATGATAGCTGGCATGAAGGTGGGTGTGGATTTTGTACATGGGAAAGTCATAAATCGGACCATAACTGCTTGGAGTAGTTATAATGATCCGACTCCTGGAACTTACCATGCATATATGGATTGGAAAGGAGACCCTGAAATCTACCTTGCGGATGACACAGGTGAAATCTGAATAAGAGCAAATCAAGAATCTCTCTCTGGGCTATATTTTCGTTTTCTTAACTTGTGTATGACAATGATTCTTGCATTTACATAACTTTCCATCAATGAATTAGTAGAAGTCATCTCATTGCCTCAGCCCCCTTTTCATTGGTGTAGCGGATTATATTAATGATGTATGTCTCTCCCTTTATACGTATACCTTAATGACACGTTTAATATGTACTAGATGCTGGAGGAAGGTGAAATGAGTGTTTGGCTAACATGTAATGACCATTATAAACATCCAAGTACACTTAGCTGATGATGATATGAAACAGATGTTTTAAAATCCGAATAACAGTAAAATAAGAATCCTGTGTGTGACCATAGGACAATCTCCACAAGCTATTTACAGAAACCGGTGAACCCTTACACTTCGATAGTTCTCTATCAACGAGTTAGAGCATGTTTGACAACTGCTTATAAGTAGTAAAAAACAACTTATTAATTGTTTATTTCTAGTCCTGTGTTTTCCAACAAATTATAAGGAGGTAAATAAGTTACATAAAAGTTGATACACTATAAGTAACAAATACTTGCTAATGGTTTATCTAAACTTTTACATTTATCCCATTCCTAGTTACTTAAAAACTACTTAAAAGGTGTTCCCGAATGAATTTTTAGTGGAAGTCTTTTCATTTTCTTAGTGGAGTAGTGAATCATATTCATGATGTAGGCCTCCTTTCACATGTGCAACTCACTGGACAATTTAATGACACATTTAAGAACAGGTAAAAGATATTGGAGGACGGGTCCTTGGGATGGCACCCATTTAAATGGCATACCCGATATGAGCACATACAAAGGCATCGGGTTCGACTTCGTTAACAACAAGTCAGAGGTTTCTTACTCCTATCATGTAGACAACCAAGCTTTAATAACTAAATTAGTAGTCAATTCTTCTGGGTATGTACAACGTGCACTCTGGCTAACCGACTCAAATTCCTGGAATTATTTCTGGATCGTTCCTAAGGAGACGTGTGACCAGATTGGGACATGTGGCAATTATGGACTTTGCGACAATAACTATTCACCACCGTGTAACTGTTTGACTGGATTCGTGCCTAAAAATGAAATTAATTGGAATTTGAGAGATGGAACTGATGGATGTGTTAGAGTGCATGATTTGGACTGTGTGAATGGGACCGATGGGTTTATGGTTGTGAACAACGTGAAGTTGCCGGAGTCGGAGAATTGTATAGTGGATTTGAGCTCGAGTTTGGATCAGTGCAGGGAATCCTGTTTGAAGAACTGTAACTGTACTGCTTATGCCAGTGCTGATATTAGTAAAGGCAGTGGATGTGTTATTTGGATTGGGAATTTGTTTGATATAAGGAATTATCCTAATTCTGGTCAGGATTTGTACGTTCGCCTTGCTGCAATCGATGTGCCCAAAGGTATGTGTTCCTTTCTTTCTAACTAGAGGTAACTTTCCATAATAGGAAAACTCCAGCCAATATAGGTCACTGGATAACGGTTTTGATTCACAGTGCATTTAAGCATACCCGCTGGTATGCATCAGCATTAGATCTTGCCTAATGGCTTGTGTTTCCATAGTTGTCGGAAGAATAAACCAATTTGATCACAAGGTCCATAGAGCTTCTTAGTGCATGCACAACTATTTCCGCGTTTATGGTCATGTATAATGAGAATTTTAATGGTCACGTATGCTGCATGATAATTGACCATCAGTTGAAATATCACCGATCACATTAATGTGACGGTTATTTTAAAATTTAATTCATGGATTAAATGGTTATGCATTTAATTGTAGTTAGGTTCAAATATCAATTTATATATTTGTTTATTCATTTAGGATATGAATATCTATCCAGATGCTTAGGTCGAAGAAAATTTTCTCCTGTACATTGTTTAGTGTTTCCTATGTCTTAAAGTTTCCAACATCGATTCCAATCATATAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATTTGGAATATTTAAAGTAGCTATTTATTTCTACCCTTTGAAAATCTTTTTAAGTTATAATCTTCAATTTGTTTCAAGTATTAACTCATTTTGTAAAGATACTTTAAAGAACAATTTTCATTAATATTCAAGTATATTTTCTTCAAATTAAAATCCCCTTTAATAAAAGTAGTTTAAATAATTATAATAATATTTATAAAGAATATTTTATCTATTTAACTTGAAATAATATTTGTAAATGTATAAGTATGATTGAAAGGAAATAGTTTTATATATATTTCAAATGAAATAAGTTTTCTTAAATAAATGGTAATTCGTTTAGATTTTTAAAGGTGGGCAAGGTTTAACGGTTGCAATGGGAAATAACTTTGTGTATTGATTGATTGCTTGATAGTTAAATAACCGACTATCAAAATTGGACAAAACCTGACTTTGGAAATATCTAGAGGAGACTTGAGAATTATATGGTACGGTTACCGATCGAGGTGCTATACCGTACGTATAAACTCGTTTGTTCTCTAGGACGAATTATAAGGAGACCCGTACAATAACGGTTAGGAGGTGAACTCTGATCTTGTATTTCGTCGGAGTATTTCCTAAAGAATCGGGGTTGAGTTTACTGGGAAATAGCGAACGTTGTTTCGAAGAGATCGGGATCGGATTTGAAATCCGAAAACCACTTCGATCCAACGATACGTTTTCGGGATGAAGACAAGAGTTTGGAGTCGAAGATGGAGCAGTGAAGTGCAAGGGCTACTCGCTACTAATCCTGAGGGTGATTCTAAAATGGATGTAGTAGGAATAGTTCCTTCGGTTCCGTTCGAACCGGGAACGGACTCGTATGGGCGAATGCTTTCAGAACATCGTCGGGTCGACGATGAGCATTCTCAAGGGATATGTTCTAAAAAGGTAACGATTAGCCTCGAGCCTCATCAACGGGGAATGACTGAAAATCAGGGGTTATGCAGCAAGGCTTCGTGGGTAGCCCCCACTTGAGAGTAAGGTCATCCATGTCTAGATGTCCCTTTTTATTTCGGCTTAGTGGTGCGGTTGTTGATCCCAATCGCGGGGTGATCTTATTCGAAACTGTCCAGTAAGGGATGGTTCCGGTCTTGTGTTGCAAGGGAGCGGGCGTACTCCTCGGTACTGTGATCTAGGCCACGTACTGTGACGGGTGGTACCCCAGTGCCTAGTCATTAGTTGGAAATCCATTCTTCCTACGTGCCTTGTTTGTATTACCCACTCTGTGGCTAGTAGCTGGAATTTAATAATGTAACAATTTCGACTATTTTAATAAGTATTTGTATATAGACCCTATTATAATATCAGAGGATTTCATAAAAATGTTTTAGCTATCGTAAGGTAAAAACCCGACATGTTTATTTGTGGCGTGGTCTTACGAGATGCTTTTATTTTCAAAAGGAATTTCCATAATTTAATAATCAAGTTGGTTGTGTTTTCTCACGCTGGAATAATAGATTGACCCGGGCTTTGGTGTTTTCCTATATGCTCGGGTTAAACCGAGCATATTTTCCAGGTTTAACTGGAAGAGTGGAAGCTTCAGAAGGAAGAGCTGGATCATAAGACGTATTCTCGTAATTGTTTATATGTAATCATTTGGTCCCGTGGATTTGATTGTAAGGACAGAATTAATATAACTGTCCGAGTTGTATGGTTGACTCTGATGTAAAACCTGGATATGTTATATAAAGGAAACAGTTTTGGTTTCATGTAAAGATTTGTTTATATTATAAATTATTCGTTCCGCTGTGAGATTCTGATTTGTTCTCTTTTCTTCTGTCTTCTTTCTATTTCTATCTTCTTTCTTTCATTATCCGTCTTTCCGTATGATTTAGCTGACAAGAGTGGATCAAAGTCGGTTTAAATTGGTATGGAAAAATGGGTTGTGACACAGTCTCTTTAACCCTCTTGACTAAGAAGAATCCAATCTTTACTTGGGATGATAAATGCACGGAAGCATTCGAGAATCTTAAGGAACTATTGACAAGTGCACTTATGCTTACCATTCCAGATGGGACAAAACCTTTTACAGTTTCACAGATGCAGGGGGCATAGGATTAGGAACAATTTTCATGTAAGAAGGAAGGGTAGTAGCTTATGCTAGTAGGCAACTGAAGGACCATGAGAAGAAATACCTAGTTCATGGCTTGGAGTTGGTAGCTATTGTTCTTGCCTTGAAGATGTGGAGGCACTATCTTTTAGGAGAAAGGTTTGAGTTGGTCACTGACCATAAATCAGTAAAATACTTATTTTCCTAAAATGATTTGAGCCTTAGGCAAAAAAGGTGGATGGAGTATATATCATTATTTGACTGGGATACACTATACCCTCAAAAAAGGGAACGTCATTGCCGACACCCTAAGTCGATGGCACACTACCTTGGGTGCTATATATGAATGAAGGCAGATATTTTTTTTCTCACACTTCATCTTCCAATCGCCAACTTAACCCAATCAAGGACTTTTGGCAGTGAGGGAGGTTAGGTTGGATTTGATGGACCGCATTGGAATTGAGCAAAAGAAGGATGAGAGGATAATAGAGTGTCTAGATAAGTTGAGCTATTTTCCCACGTCGGTAGATAAACAATTAACAAGAAGGGATGTTTAAGAAAAGATGAACGCCTTTGTTTACCAATGATCGACAGTGTGCTGGAGGAAGCACTTGCAGAGCATCACCACTCAAAGATGACCATTCACCTCGAAGGAGACAAGATGTATAGGGATATGAAGAGAATTTTCTTTTATTCAGGAACGAAGAAGAGAGTAGCTGAGTTTGTTGCTAGATGCTTAACATGTCAAAGAATAAAGGCCAAGCAAGGGGAACCCGAAGGATTGTTGTTACCATTGGAGATTCCAACTTGGAAATGGGAGCACATTTCAATGGACTTTGTTAAAGGATTGCTTAGAAGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020251051.1	1.0e-146	S-locus-specific glycoprotein S13-like isoform X2
Swissprot	O81832.4	6.6e-98	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
trEMBL	A0A5P1F8I1	7.4e-147	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G27290.1	38.57	2e-97	353		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g247636	AT4G27290.1	446	263	5	1	440	6	446	38.57	2e-97	353
g247636	AT4G21380.1	469	264	10	15	478	29	481	39.23	2e-96	350
g247636	AT1G65790.1	406	222	9	22	422	28	426	42.36	1e-91	333

Ortholog group

Species	Genes
Allium cepa	g112747.t1; g247636.t1; g290102.t1; g291250.t1; g41186.t1; g439163.t1; g492461.t1; g492465.t1
Allium fistulosum	AfisC1G00160; AfisC1G00162; AfisC1G00168; AfisC1G00169; AfisC1G00195; AfisC1G00197; AfisC1G00515; AfisC1G00519; AfisC3G00075
Allium sativum	Asa0G00061.1; Asa0G03005.1; Asa2G00286.1; Asa4G01602.1; Asa6G05776.1; Asa7G00230.1; Asa7G00231.1; Asa7G00336.1; Asa7G00337.1; Asa7G00368.1; Asa7G00380.1; Asa7G00642.1; Asa7G00644.1; Asa7G00680.1; Asa7G00681.1; Asa7G00685.1; Asa7G00693.1; Asa7G01016.1; Asa7G05514.1; Asa7G06044.1; Asa7G07510.1; Asa7G07542.1; Asa7G07543.1; Asa7G07588.1; Asa7G07590.1
Arabidopsis thaliana	AT1G65790.1; AT1G65800.1; AT4G21380.1; AT4G27290.1
Oryza sativa	LOC_Os01g57560.1; LOC_Os03g35600.1; LOC_Os04g54070.1; LOC_Os05g42210.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	71	175	90.8	4.4e-26
PF00954.17	S_locus_glycop	Domain	207	316	114.1	4e-33
PF08276.8	PAN_2	Domain	337	403	78.7	2.2e-22

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network