result

Gene information

Detail information of g248448

Location

Gene	Chr	Start	End	Strand
g248448	Scaffold_57124:HRSCAF_440210	78606	82025	-

Sequences

CDS

Protein

Gene

>g248448.t1
ATGAACCTAGTTCTCATTTATTCTCTTTCATTGTTGATTCTTATTTCTCTATCTTCCGCTTATGAATCGCCCTTTTATGAGAAATCAAAGTTGGATTGTGCACCAGTAAATTGTGGAAATGTTAGAAACATAACGTTTCCATTTTGGGTAGAAAATCAACAAGCGTCTTACTGTGGGTTTCCATCTTTTAGACTCAGTAGTAAAAACCAAACATTGGTTCTTGCAGCTCATTATTCATTACAAGTTAAAAATATATTCTTTGAGAACCGATCAGTTTTAGTTGCTGATGAAACATTTTCTGGCCTCACTCACACATGTGGATTTGCGCATGGTCACCACTCTATTTCGATCAGATGGTTTTCAATATCAGCCATGCCAACAAGAACCTTACTTTCTTATACAACTGCTCTAAGCCACCATCTACTTACCGCAAGATCAATTGTACTTCTAGTGCTGTTACCACATATGCAGTATGGGACGCTGATCGGAGGAGATATTCTGAGATGTGTAGCTCTGTCGCTGCGTATACGTTCGTTGCAGGTTACATGGGTGGTAATATTAGTAATTGTTTGAGGGCAGTAAATTATGGGTTTCTTCTAAATTGGTCTGCAAATCAATGTGAAGAGTGTGAAAAAAGCCATGGCAAGTGTGGATACAATGAATCATACAATGGTTTCATGTGTATTTGTCCTGACCGAAACCATTATAGAAGTTGTTTTCCAGATGCTGTTGGTGAGTGTTTTATATCATTCTCTCATAATAGCATCCAACTAGAAACCATTTTGATGCTTGGGATAAATTTTTTATGGGAGTACCGAGGATCCTTACTTGATTAGGATTCAACCGTGTAATGCCTTGGTTGCGTTCTTTTGGTTCCGTGTCTGCTTTCTCCAATGCAATTAGTAACAGATATGTAGATTAGTTATTTATATTCCTTTTAGTACTTAGTACTAAACTGATTGATCCTTGGATATCATGGGAGAAATGTCTTCTATTTTAGCTATTATTGATTACTAAAAGCAAAGGTTCTTCCAATATTTTTAAACCATCGAAATTGATGGTTTTTATTAATAAGTTTTCTTAAATCCTTCGGAGTTAAATTTTAAATGTAAACCGTCAAACCTCGTAATTTACAAGAGCAGATAATTTGAAATATCACAGTTTGTTCTTATGAATAGAAAGTTATGTTTAACCCAACTTAGTGGTCCAGCGGTAAAAGTTAGTGGAAGACGAAATGTCACGAGTTTAAGCCTCGATAATGATATTGCGACATATAACAATATGTGTATATACCTAGACTATGTGTTGGCTGTTTGATGTCCTGAAGGTCATATAATGCGCTAAAGAGGCTATATTAATAAACTGGAGCTGATATCAGACTATTAAATAGCTTCAACTTAGGACCGCCATTACCAATACGATAGTTTACACTGAGTAACTTTGGTATAACTTATGCATACTAATATGGGGTTTATAAACTCTGAAGCGTTTCCTATTTTATTTAACCTAAAGGAATGTATGATTAAGTTCAGTTTCTAGTCTGATAATACCGATGTTACTGTATTGTTATTATAATTTTATTTTCATTTGTATTGATCTTTTTGTTTAATTTTTGTGCTGCAGAGAAGAAAAGGAATTGGGGAGCTGTAATTGGAGTTGGTAAGTAAATTACTTTGCCTAGCCATTTCATTCATCTTCCAAAATTTTGCTAACGTTGCTTCCGGTTAACAGTTTCTGGCCTTGGAGGAGCCCTCCTCCTTGGAATATGTATTGTTCTATTCTTATGCGTCCGTAAAAAGAAAAAGCTGAAAGCTAACTCATCAAACCTCCTTTCACAAACTGCTTCTTCCATATTATCTTCTAAAATGGATCCTGAGGCAGGAGAACCTAATTACAATACTCATATATTCACTTATGATGAGCTTGAAGAGGCGACTCATGGATTTCATGAATCTAGAGAGCTTGGCGATGGCGGCTTTGGTACCGTCTACAAAGGTATTTTTATTCAATAACGTTCATCTGAAAAAATAACAATTATTTAACTGCTAAATTTATACATTTTTTCTCCCATATATTGAAATTGTTCCCTTGAAACCTGCTCATATGTAGTATCATGTTATTTGAATTGTTTCGTTATAGGCGAAGTGAAGTATGTTTGGTATTGTATTTCTAGCAACCAAGTCGATCTTGGTTTTGAAATATTTATAGTTTGGATAATGAAACTAATCAACATTCAGTCTTCTCATTCTAGACGAATACAAATTTAATTTTGCTTATAGCATCCTTAAATGTTTTTATTTTTATTATTTATTTTTCCAGGTAAACTACGAGATGGAAGAACAGTAGCAGTGAAACGTCTTTACGAAAACAACTACCGCCGACTGGAGCAATTCATAAACGAAGTCGAGATCCTCTCCCGCCTGCGCCACCAGAACCTTGTGACCCTGTACGGCTGCACCTCCCGTCACAGCCGGGAGCTCCTCCTCGTCTACGAGTACATCCCCAATGGAACCCTAGCGGACCACCTCCATGGGTCCCTCACGTCCAAACCCGGTCTCCCATGGCCTACCCGCCTGTCCATCATCATTCAAACGGCCGAAGCCCTATCCTACCTCCACTCTGTCGAGCCTCAAATTATCCACCGCGACATCAAAACCACCAACATCCTTGTCGACAACAACTTCCAGGTCAAAGTAGCCGACTTTGGCCTCTCCCGCCTCTTCCCCCTCGACGCCACCCACGTCTCCACCGCCCCGCAGGGCACCCCCGGCTACGTCGACCCCGAGTACCACCTCTGCTTCCAGCTCACCGACAAGAGCGACGTGTACAGCTTCGGAGTTGTATTAGTCGAACTCATATCGTCCAAGCCTGCTGTCGACATCAGCAGGCACAGGCACGAGATTAACCTTGCAAATATGGCGATCTCGAAGATTCAGAATTCCAAAATCGGGGAGCTGGTGGATCCGGACTTGGGGTATGAGGATGATTCGGAGGTCAGGAGGATGGTTAATCAGGTTGCGGAGCTGGCATTCAGGTGCTTGCAGTCAGATGGGGAGATGAGGCCAGGCATTAAGGAAGTCCTCGACATTTTGAGATGCATAAAGGGTGAAGTTGACGCAGATAGCGTTGTTGTTGATAGTCCGGTGAAGGAGGAGTCTAAGTTGTTGAAGAACGTTGTGCCGTTTTCGCCTGATACTGTAACAGATAGATGGTCCAGTAGGTCTACTACGCCTAACACTAGTACTTGACGTCTCTTATTTTGGTAGTAATTAAGTAGAGTTTCCTTGTGATATATACATATGTTATGGAAGGTCTGCCATTTTTGTTGTAAATTTTATTTATGTTTGGATCAATAATATCAACAGCAGCTTTAATAGCCATGTTGTAGGAAGTAGTGTCATGCTCCTCTCTGGCATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252731.1	3.2e-190	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2
Swissprot	P0C5E2.3	2.0e-133	Probable receptor-like serine/threonine-protein kinase LRK10L-1.2
trEMBL	A0A8B7MV30	6.5e-185	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G18390.2	44.58	6e-140	494		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g248448	AT1G18390.2	637	301	14	33	633	34	654	44.58	6e-140	494
g248448	AT1G18390.1	619	291	14	45	633	49	648	45.07	7e-136	481
g248448	AT1G25390.1	480	186	10	173	639	171	624	53.12	8e-129	457

Ortholog group

Species	Genes
Allium cepa	g158679.t1; g158681.t1; g158684.t1; g158688.t1; g248448.t1; g398358.t1; g398362.t1
Allium fistulosum	AfisC7G02506; AfisC7G02524; AfisC7G02528; AfisC7G02529; AfisC7G02533; AfisC7G02537; AfisC7G02569; AfisC7G02570; AfisC7G02571
Allium sativum	Asa0G02395.1; Asa2G06138.1; Asa3G00057.1; Asa3G02682.1; Asa3G02686.1; Asa3G02856.1; Asa3G02865.1; Asa3G02866.1; Asa3G02867.1; Asa3G02870.1; Asa3G02874.1; Asa3G02876.1; Asa3G02884.1; Asa3G05131.1; Asa3G05133.1; Asa5G00353.1
Arabidopsis thaliana	AT1G18390.1; AT1G18390.2; AT1G25390.1
Oryza sativa	LOC_Os01g04409.1; LOC_Os01g04450.1; LOC_Os01g49529.1; LOC_Os01g49529.2; LOC_Os01g49529.3; LOC_Os05g47770.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF14380.3	WAK_assoc	Domain	175	220	45.2	1.1e-11
PF00069.22	Pkinase	Domain	316	587	169.7	6.8e-50

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network