result

Gene information

Detail information of g251703

Location

Gene	Chr	Start	End	Strand
g251703	Scaffold_57558:HRSCAF_440644	36043	41075	+

Sequences

CDS

Protein

Gene

>g251703.t1
ATGACCCCAAGCCACCGCAGCCGACCCACCACGCTCCCCCACGTCGAGCCGCCTACGTACACGCCTCGCCTGCCCCTCCATCTCCCGTGCGTACGCACGAAATCTCGCCGTCGAACACAATTTGCTGCTCTCGAACAGTGGGCCTTAGCCGCTGCCACGACTCGTCGATCAACAATCCAACCATTGGTTAAGCTCGTATGGTCGTGCTCTACATTTTCCTAGTTGAAGTCAAAGGCTAATTTGGCTCCTAAAGGCTCCGATCGATGTTAGATGTTGGATGGTGGAGTTTTAATGGTGCCTGAAATTTATTTTAGGGTTATGTTTTGCAAATGGAAGAAAGTTGGGCTATTTATAGAAAATTTTCATGGTACTATTCATTCATGAAAATTTCAAACTCCAAACGAAGCGTTCTGTATGTTATACCACTATTCCAAACACAATATATATATATATATTATATATATATATATCAAAAGTCAGTTCCATCATATTCAGAAGATAGCTTTTCAAAATCAAATTATTTTAATTGAAGTTGCTTTAATTAATTTCTATGTTTTTCGAACTCGCAGTACCAAACAATACGTCTTATCGCCATGGAATTCGACAGCATATAATAATTCACTATTATGAGTACAACGAAACTAGTTTCGTCAAAATTCGAGACTGTGTCCCAAAATGCTATTTTTACACATTATTTAAAACGAGCAATTTTCAAAATTAGTTAAATCACTTTAAAATCCAAATTTAGAAGTTCATTATCCTTCTTCTTATTCAAATAGAATTTAAATCAACTTTTGAAATCATTTTAATTACATCGATTCAAGATTCGATTATCTTAACAATTACAAATATTAAATTCAACAATTTACTGATCAAATAAATCATTATATTTGAAATTCAAGTTATTTAACTTATAAAATTAACTTTTCAATATTTCAAATAAATTAAATATTCTAAATTCGAATGTCTAAAATTCTGGGTTGTTACAAACATATAATTATGACTAATAAATCTAGAAGTTTCACATATGGAACGTGATAAGATGAATTTATGTGTATGTATATATAATTCACATGTCATCATATTATGTATGTATTACTTTAGCAATGTACAACTTATATTTGGGAAACATTTTTTTTTTGAAAACTCAGGAGAACAAGGTGGACCGGTAAACTCCTGAGGACGGCGTAGTAAAGTCGTCCGCTGATCCAAGCCCCCATACCCCCGGGTAAATTTATATAGGATAGGGAAGCGCATTAAGATCCACGTTTTGAATTGAAATAAAACATTAATTTAAAATGTAGACGAGAGCTGAATGCTAACTATTATACATATATGTGCATTAAGATCCACGTAGAGATTATTTTTTCGAAATTTACGCCATTTCATCTATCGCCGAAAGGATCTGAACCAATTTTTGAACGAGGTTCCAACTCTTGATCTTATTGATGGCTCGACTAATGACAACATGAGTAATATTGATGATTAACCCTTGCAAATTTTCATGTCAATGTTTTATAAATTATTTATAGTTTTCTTTTCGCTCGTTGTCCTTTTTTTTCTAATGTAATTTTTTTATTCAATGATCAACATGTTTTTTATTTGAATTGATAAATTTTACATCCAGTTAGCTCATTTATTTAATTAAAAAAAAAAATTCATCAAACATAATACATACCAAAGTCAATTTACTGCTAAAATACACAATTCTAACACTAAGTCACAAGTTTTTTTTCTTATTGTATTCCCACCCTTTCTTGCACTTCTTTGCCACACCATTTTGTTTCCTCAAAAACAACGAAATCATATATGTCACTATTTCATTGTATATACATGAGCAAAACATATACATCTCATATATTTCATATATAAATTGCAATTATACCTTTATTTCATTATATTTGAGAAAAAAAGAGGGTGAAACAAATAAATCGTTTTCATCATCGAGTTGTCTTGTTTATTCATCCAACACTAATGTGTAATCTAGCGTATAAAACCGAGTGTGTGACATATATAATCTATCAACATTACCTTTGTGATATATAATGACTATATTTATGTAGTCTTTACAATGATTTTTCGTTTCATTTCTATTTAGTACATTAAAGTTTTTTCTCCTTGTTAATAATTACTTTTTTCTACTAGACATCCAACACGTAAACTGATAATGACAATTAACAAACGCTCATCCAGCTTGTGTATTGAGAATCCATGAAAACTTTACATTAAAAACATAATTGAAATTTTGACTATATATTCTGAAACTAATATCCGCCGTTGATTTGAAATTAATAATTCACTTCTCCATTTTAATCGGAAATAATAAGCTTACTCTTCATCTAAAACCATCTCCAACGATATTTGCCGAAGAGAAATAGAACCATATGGTGTTGAGGTGCTTATTCAGCAAACGCATAAAACCAGACATTGTTGAACAAACGGTTTCAGCTTCACAGTAGTAAATTTTTATATTATATATATGATTTCAGGCGCTTGCTCAATAATCGGCTGAAGACCGGACGATTGTTCAATAAACGTTTGATAACTAGACGCTTATTCAACAAACATCCAAACAGATTATAGATACAGATTTTCATTGAATTTGCAACCAATTACAAGTTCTGCACTATGTTGGATGATGATTCCAATTTACATTTACAAAATTTAACATTGAATGCTATGGAGATGCTCTACGCAAACATCAAATATTAAATGCTAAAGTATTACACGAAGCACATTTAACAAATCATATCATTATACTATATCCTCACAATGAAAAACGAGAAATATAGTACCACAAAATGGAAAAGAGACACCCTAGAAAAGAAACCCTAGTAGTCTACGAAACCTTCACGTGACATAGCCTAATAATTAATAGCACCTTCTTCCTTCTTTTAATTCATGGCAAAATAAACAAAAGAAATTAATGGAGCAGCACTCTATGCTATGAATCAGCTACTCTAGGGCTTCTAGACTACAGTCCTTCCTCCTTCCTCCCTACTCAAATTAACCTGCATCTACTTGCACTGCATAACATACCAAACTCCCAAAATAAATAAAAGTTATTCATCAATTCATACAAAGAGCAAGAAAACAAGAAGCAGAAAGTGGACCTTCTTTGGCTTTTAACACCAACTCAGTAGGTACAGAAACTGCACCACCACAGACCGCAGCAGCAGCAGAAAGAAAGCAATAAATTCAAAGACAGATCTTTTTCAGAAAGAGAATTTTCAGAATTGCAACTTCTTCCTCTCCCCTCTCCCTTTTTTATTCATTTATCCATCATTCACAGTCCATTCAATTTTTAACCGTATTCAGAATCTAAACATCGAAAGTGGCTTCTGAAAGGTCGAGATTCCCGCCTGACACTGCCGCCGCGTACCCGGACTGGATAACGACGTCCGCCGCCGCAGCACGCGGCGGCGATCTCTGCCTTGGCTACGTCGTGCCTGGCCATGCGCATCATCACGATTCGATATTCTCACCCGCAATTCCGCTGCTGTATACTCCGACAAACAGCAACGTAGGGATTAGTTGGCAGCAAAACCCAAGCGGAAACCCTAGCAATGAAAGCGGACACAGCGGCAGCGCCACGTGTCAGGATTGCGGGAACCAGGCGAAGAAGGACTGCAAGCACAGGAGATGCAGGACGTGCTGCAAGAGCAGGGGGTTCGAGTGCAGCACGCATGTGAAGAGCACGTGGGTACCTGCGGCTAGGAGGAGAGAGAGACAGATGAATTCAGCATCTATGAATAATGTCGAGGGCGAGAGTTCAGGGACGAAGAAACCTAGGATTCTCTCGTCGCAGATGAGTGGGAATTCGCGCAGTTCGACCGAGAATAATACGGCTGCCATTGCACGAAGTTTGAGTTTAGAGACTAGTTCCAGCCATCAAGGTAGTTTTAATTATGACATACATGATCTATACCTTTTTACATTAGATTTACATTTTGAATCTTAGATTATTTGATGAATATTTTGTGCAATATTTTATATTTGCTTTAGTTGAATTTAAATTATAGATTTGACTTTTAATTATTTGTGTGTTAACCATTCCCTTAATTTCTTTTTATCATTTTATGGATAAGAGTAGTCATTGTATGATGAATATCAAAGCGTATACGTTATATGATATAATATAAGTACATGGTGTTCTAAAGAATTTGAAATTTTTGTTATTAATAAATTCTGGATGTCGTACTTGTCATAGTATTTGATGAACGTTTAATATAGAGTCAATAGGAATGGCCAACAATCACATGAACATTTTGTTTATTCAACTTTTGATTGTTTAGATTAATTAATCGCATCAGTTATCCAAATCATTGTTGAAGTATAGTAGCTCTTGTGTGTATGTGTGTGTTATCCAAATCAGTTACCTATAAAGAACAGTAAAATTTTGGGATAAAAGGTTCGAACTCATGTCAAGAAATGGAGAATGTAATAACATCACCTATGCACAAGGACTTCACTTTCATATTATTTTTTTGTGCACAAGGACTTCACTTTCATCATTTTTTTTTTGCACATACAGCGATGTGAATGCATAGGTTACTGGGAATGGTACGTGTATTTTTCGGGTAATTATGAAATGAAAGTCTTAACAACACACACACACACACACACATATCTTAGAGCAAAACTAGTTGTATGTCCTTAATCGTAATTATAGTCTTAGTTGATAATGCATAGTGACTATTACAGGAGCAAGATTTAGAGAAACGTTACCAGGACAAATCAGAGCGCCTGCATTATTCAAATGTGTGAGAGTTACATCAATTGAGGATGATGGTGAAGACGAGTATGCATATCAAGCAATGGTCAAAATTGGCGGTCATGTGTTCAAAGGTTTTTTGTATGATCAAGGGCTCGATGATGGCAGAAGTAGCGATACTAATTTTGCCACCACTTTAGTTGAGGGTGGAAATGCAATGCCGAATTTATCAGAGCTCCATTTGGGAGGTGGAGTATCCACCAGCGGTGACTTAGCTGGTTTTCTTGGAGGTACGAACTACGGTAACCCAATGAACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009391542.1	6.9e-61	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9.1	4.7e-38	Protein LATERAL ROOT PRIMORDIUM 1
trEMBL	A0A804I9V1	5.0e-61	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G12330.4	58.85	1e-52	204	LRP1	Lateral root primordium (LRP) protein-related

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g251703	AT5G12330.4	192	57	5	236	422	199	373	58.85	1e-52	204
g251703	AT5G12330.1	206	61	6	236	430	112	300	56.80	4e-52	202
g251703	AT5G12330.2	206	61	6	236	430	112	300	56.80	4e-52	202

Ortholog group

Species	Genes
Allium cepa	g133321.t1; g251703.t1
Allium fistulosum	AfisC2G04335; AfisC5G02803
Allium sativum	Asa4G04365.1; Asa6G01976.1; Asa6G01977.1
Arabidopsis thaliana	AT3G54430.1
Oryza sativa	LOC_Os01g72490.1; LOC_Os01g72490.2; LOC_Os05g32070.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05142.9	DUF702	Family	233	392	202.0	5.5e-60

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009555	P	pollen development
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009791	P	post-embryonic development
GO:0009908	P	flower development
GO:0010033	P	response to organic substance
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048653	P	anther development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050896	P	response to stimulus
GO:0061458	P	reproductive system development
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network