result

Gene information

Detail information of g251934

Location

Gene	Chr	Start	End	Strand
g251934	Scaffold_57591:HRSCAF_440677	340874	347349	+

Sequences

CDS

Protein

Gene

>g251934.t1
ATGGAAGTTTCACCCGAATCTCACGTCCTATCCTCTCCAACTGGAAAGAATCTACACCGCCGATCGCGGTCGCCAGAATCAGAGTCAAAGCGCCGAAAGCATCATCATCGGCACCACAGCGACCGACACCATCGTCATAGGCATCGTAGCAGAAAGGAGAAGAAAGAAGAGAATCCTGAAGATGGTGATAACATGATTAGGAATGAGAGGTACCAAGTAGCCGAGGATGGAGAGATCGAAGAAGGCGAGATTTTAGAAGAAGGGGAGATTGTTTCGGATCATGACACAAGATTTCTGGTCTGATTCTTTTGTTTGTATCAATGTTTTTGTTCTTTTTGTTTAGTTATGTATGCCTAAATCGCCCTTTCACTTCATAGAACTAGTATGTTCTTATTAGTTTATAAATATGGGTCCGGATAGTTCACTGAGCTATACATTTTATAAATTTAAAGCCCCAATTTGTATGAGAGTTGTGTGCACATTGTTTTTGAACAATGGGCACGTAAGGAATTATGCAATCTGTTTTGAAAACATACTGTTGTTCAGTTGTGATGAGTTTATTTTGCATTTTGTACAACTAGCTTTATTAACCTCCTTCTTTACTATTGTCTACTTGTTCCATCCTTATATGCTGCCTGGATATAATGATGAACGTATAAAGATATTCCATTGGATCCTCCTGGAACAATAGTTCTTATCATATTTAATTGTTTATAGTGAATTCCTGGTTTTTGCATATCTATTTGAATTTGGAAGAATAGCTTCATGTGCACGGGGTTTCTTTTCTCCAATTTCAATTGAAAAAGATTCCCAGATCAAATATATTACGTACTGTAAATCTTAAATTCTTTCGTTTTCCAGCACATACAGGCCGTTCCTGATAAGATTCATAATTACTCAGACAATGAAACTGAACCTAAAGTGCTTGATAATCATTTGGATTCTGCAAGTCCGGAAACTTTGCCTAATAATTGTGGAATTCACAGCAAAAAGATTGAAGCTATTCCTAGGTGGGTTGATGACAAAACAAAAAGGAAATCCTCAACAACTCTGGCTGTAATTGATGTGTTAAATGATGTCAACACAAAAAGAAAACAATCAAGGGTTGATGCTGTTGCTGTTGTTGATGATGGAGATAGAAGTCGAGTAAGATCGGTAACGCCATTTTCGAGGGATAGCACAGATGTGAAGAACAAGGCTTGTGATGAGGATATCGAAGTCACATCTGATCATTTTAGGAGAAGAAAGAAAAACAATGAAAAAAATCGAAGGGATAGGTCATGGTCACGTGAGATCGATTATGATAGAAGAAATCACTCAAATAATTTAGAAATAGATAAGCACAGACATGCCGAGCACGGTGTTAGGGAAGACGAGTACGTTGATCGCATAAGACAAACAAAAAAGGCTAGAGCTGCTCAGAGGGAAAGAGATAGGAGTGTTAGTCATAGCAGACATGACAGAGAAGATTTAAGACATACAAACAATGATAGAGACATAGATAAGAGTAGAGAATATCGTAAAGAAAGGGAAAGGAGCTCTAGTATTTCTAGCAGAAAAGAGTATGACATGAGGAAAATGGAACGAGATGGTGGAAAACACAGAGACATGGAGAAACTAAGGGATGTGAGCAGGGATAGATACAGAGAAAAGGACAGGAGTAGAAGAGGAAGGGATATGGATAGCTATGATAGAGACCGGGGTCGTTGTATAGACCGAGATAGAGAAAATGGTAGGCGCAGTGATAGAGATAACCTTGGCATGCATAATGATTCACGACACCCAAATTATTATGAATGTGACAGGCAAAGGGAAAGAATAAGATCAAATGAGATACGTTCTGCAACAAATGATTTAGATAGGAAAGGGGAGACTTTGAGGTAATATATTTGAATCATCCTTCCTCACTGTTTGAATTGAATTAAATAATAATATATATAAGATAACTTCAGATTTATATGCTGTTGTTTGATTATCTTTTTTGCACTTCTATTTTATTAGGGAGGAGGATGAAGACGATTATCAAGAAAAAATTGAACACCAACTTGCTAACCAAGAAGAGGAAGAACTTGAGAGAATCAAGGAGGAGAGCAGAAAACGGAAACAAGCCATTTTGGAAAAATATAAACAACAGCATTTGCAACACACAGTTTCTGTATCACCTGGTAATACACATTTGTAGTCATCAGTTTGTTTCTCTTGAGATGGAAACTCACATTCATGGATCATCGTTTGCAGCAGTGAACGGGGAACTTACACTGGGAGACACCAAAGAATGTTCGGACACAAAGCATGATAATTCTGATATGAAAGAAGAGTTTCCTAATGGTTATGCTATTGATCCATCTTTCACCGTGGAGAAGTCATCTATAGATAATGGAGTCCCAATTCACGAAAAGGGAAGCGGGGTTGGGGGACTTGGTGAAGGTTCTCCTAAGGTTTGTAGCTAACATTCCAATATATGAGTGCCTTTTCATGGTTGACTTTATTACTACCCAGTGCAAGCTCTAAATAAAGTCTGCGTCAAATATAAACAAAAACTTGTCTATGCAGAGTGAGAGATCAGCGGATATGTTTTGTGATGATATTTTTGGAGAATCACCTGTTGGAATTCGGAAAACGGTAAATTTTTGACCAATTTCATCCTTATTATTGGAGTGAGCTATAGTTTAGATTTTGTCCTGGATTTAAATTTAAAATTTTCTCTGAAAAGCAATCTTTATCCATACAGTATCCGTGCTTTAGTGGGATGTAGGGTGGGATGGCAAATTATCAGTTTCTGTTGCTTAATGTAATTACAACCACTTAAGAGTTCTGGAAGCAAATTTTGCCGATTATTGTTAATACTGTAGTGCTGTAGGATTCTAGATAAGCAGAGCAGTCCTTATGTAGGGTGGGTGGCTGCCTTTGCTGCATAATAATGTACATTATTCTCTCTGGTTTGATTTATTCAACTTTCATGGTTTGTGTACAAAGCGACATTTACATATATACTTCTAGACAGTAACAGAACACTTTTATCAATTGGCTTCAGTTGAAAATGATAATTTATTTGAATTTTCTTTGATGATTTGATAATTTAAAAGAGACTCTCCTTATTAATTTATGTGTGTGTGTGTGTGGGTGTCTTTTTTCTCTTCCTACCTGAAAGGAAAAATAAACCCATAATATGTAATTTGTCTAGGACAAGTAAAAATAAATAAATGGGGAAAAGTATTTTCTAGTCAGTAGTTGCAAACCACTTAGATATAAAGGTTTCAAATCGCGAATTTCAGTTGAGATCTTGGTTTGGCATCTCAGTCCATTTCTCGGATATGATGAGTTTCAAACAAGATAAAAACTAGTGAATAAGAGATCTCGGACGAGTCGATGGAGATTTAAAGCTCTGAATATGTCTAAATCAACTATTCTTCTGCATCGTTTTGCATCATTTTTCTTACTATGTTCTATTTTCAGGGTAAAACAGATGCTTTACAAATTGAAAAGAGTGGCCTACATGACAATTGGGATGATGCAGATGGCTACTACAGTAAGTCTATATGGGACCATTCTTCTTCTTTAGGTTAATGAATGAATGCACAAACGTCCTTTATTCATTCAAAATTTAGTTCTGCTCTATCTTTTTAATTCACCTTTTTACATCTCATTCCTTCCTACCAAATATCTTGATCCCACTTTCACTGTTTCAAATCTTGTCTATTTTGTTGTAGATCTTGTTCGAAATTCCATTTTTGCACTTGGGTGAGACGAAATATAAGACGAGGTTACAATTTGAAATCTCGTTCGAAGACGTGTGTTTCTTTTAAGAGTACATTTTTTAAAACTTTTTTATATATGTACAAAAATATATTTATACTATTTTTACTGTTTACTTAGATGAATCGTAACAAAAAGGACTATTTTTTTGTTTAATAGAACAATCATCTAATCACTACCAAATTAGTTACTTCATTACCGTCATCCTAAAAAAAAGCACTCTTCCTAGTTCACAAATTTCTTCCTATGCAAATCAAGTATACACTTTTTATTATTATTTTATTTTTAGATAACAATTATTTGATACATATTAATTGTAAATTTTAGACACATAAATTACTCCGAGATTGTTTTGAGGTATAATTTAAAATTCAAGATGTCAATTCAGGATGTACACTCATCTCATCCGATATCACATCTGATATCGTGAATTAAAATCTTGAGGCGAGACATGACCAAAATTCATGATTGTAAACCTTGCCCACCCCATCTACTCCTTACTAGCTCAGAAGAATTAAATTATAACCATTTTCTTTTCTTTTCTCCCTGCTCTTTATCTCCTTTTCACTCAATCTTCAAAATGCATTATCTTTTCATGAAAAATTCAAATTGAAAATTTATTTTCACTATCACATCACAATTTTCCATAACCATTCTAATGATAAACATTGTGCACATATAAAATTCAAATTCCCAGAAGTCTAGTTGTTTAATGTCTTTTGTGTAAAAATCAAAACAATTACACTTCATCATTGAGACGTATAAGTCAAAAGCTTATATAAATATATACATACATACACATCACTAGATTTCAATCTTTTTTCTGTAAAAATAAAATAAAAATACAATCTTCCGTTTTGCAAAATTAAGACCGTTTTCCTTTCCCTTTGTAAAATGAAACCTTATTTTGTTTTTTGTTATTGTAAAATGAAACCGTATTTTTCTTGTTATTGTAAAACGAAGTCCATCTTCCTGTTTTGTGAAATGAAGACCTTTTTGTTGAATGAATGTTTTTAATTTCATAAAAAAGAGTTATAATATTTTTCCTTCCAATTACTAAACAGAGTAAATTGATTTTTAGATCTTTCTCTTAAACCGGTTGACCAAATTGAACTTTGTTATCTGTTGTAAAAGGAAGTTCATCTTTGTATAGGTTATAGATTTGGTGAAATTCTTGATGGTCGATATGAAGTTATTGCAGCACATGGCAAAGGAGTTTTTTCAACTGTTGTTCGGGCCAAGGACCTTAAGTCTGCACCGGGTGAGCCTGAGGAAGTTGCCATAAAAATAATTCGCAACAACGAAACCATGTGAGTAATGTGGAGTTATTGTACCTAGGTTAGTTATTCCTTATGTTTTATAGGTAATTGTTTTTTTATGGTTTTTCTTCTTTTGTCACATGCAGGTACAAGGCTGGTCAAGAAGAGTTAAAAATATTGGGCAAGCTGGCTGCTACTGATCCCGAGGACAAGCGTCATTGTGTTAGGTTTCTTTCTACTTTTAAGTACCGGAATCATCTTTGCTTAGTTTTTGAATCTCTTCATATGAATCTTCGTGAGGTTCTAAAAAAATTTGGTCGTAATATTGGGCTGAAGTTGACCGCGGTGAGGACATATGCTAAGCAGCTTTTCATTGCCCTGAAGCATCTAAGAAATTGTGGTGTATTACATTGTGATATAAAACCAGACAATATGCTGGTAAAGCCTTGTCATCATGCATGTTAATTTATAATGTTAATTATGTTGTCATTCATATCAATTATACAAACAACTGTTATAATATTTCATCTAGGTGAATGAGGGAAAAAACATTTTAAAGCTATGTGATTTTGGTAATGCTATGTCTGCTGGCAAGAATGAACCCACACCATACTTGGTTAGCCGTTTCTATAGAGCTCCAGAAATAAGTAAGCATTGATATTGTTTATTTTATGATGTGAATTTTGGAAGGCAATGGCTTTAGCACTTGTAATCTCTCTATGTTTTATCTTTATTCCTAAGCTAAATTATCCTTTTGCAGTTCTTGGACTGGAATATGATCACCCCCTGGATATGTGGTCAGTTGGGTGTTGCTTATATGAACTATATTGTGGAAAAGTTCTATTTCCTGGTCCATCTAATAATGATATGCTTCGTCTTCATATGGAATTGAAGGGTTCTTTTCCAAAGAAGATGCTTAGGAAGGTTAGATGACTGTGACTTTCTTATTTGGTTAATATGCTTTACTATTTGACATTATATTACTAGCATAAGTGGATCAACAGGGAAACGGTATTCCATATATTTTGGTCATTGAACAGCCTTTTCAATCCTTTTACTGTGATGCTGTTATGCATAAATTGAATTTTTTTTGCTGTGTGTTCTCTTGTATTGCAACAGGCGTTATTCACTAGCCAACATTTTGATCAAGATTTGAATTTTCTGGCTACGGAAGAAGATCCGGTTACTAGGAAGGTAAGCTTGTATTCTTTGCTCTTTGGTCACCTATTTTGGTGATGTTATCCTGTACGATTTATGCTTTTCTACCTGCAGCCTATCAGAAGATTGCTTCTGAATATCAAACCAAAGGACATTAGCACACTTATTTCAAGTTCTCCTGGAGAAGACCCAAAAATGACAGCCAATTTCAAAGATCTTCTAGAAAGAATATTTGTTTTGGACCCAGAAAAGCGCTTAACTGTTTCTCAAGCATTAAGTCATCCTTTTATCACGGGCAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020277219.1	2.5e-209	serine/threonine-protein kinase prpf4B isoform X1
Swissprot	Q13523.3	1.6e-109	PRP4 pre-mRNA-processing factor 4 homolog
trEMBL	A0A822YL94	7.9e-210	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G25840.2	60.16	0.0	716		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g251934	AT3G25840.2	635	204	9	339	937	52	673	60.16	716
g251934	AT3G25840.1	654	206	12	312	937	314	935	59.33	712
g251934	AT1G13350.1	669	265	11	304	937	105	761	53.36	649

Ortholog group

Species	Genes
Allium cepa	g156922.t1; g251934.t1
Allium fistulosum	AfisC4G06162; AfisC8G02348
Allium sativum	Asa1G02886.1; Asa5G05196.1
Arabidopsis thaliana	AT3G25840.1; AT3G25840.2; AT3G53640.1
Oryza sativa	LOC_Os12g44330.1; LOC_Os12g44330.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	620	934	162.3	1.3e-47

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016310	P	phosphorylation
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08827	PRPF4B; serine/threonine-protein kinase PRP4	EC:2.7.11.1	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network