result

Gene information

Detail information of g252539

Location

Gene	Chr	Start	End	Strand
g252539	Scaffold_57678:HRSCAF_440764	1027951	1035290	-

Sequences

CDS

Protein

Gene

>g252539.t1
ATGTTTACTGAAATTGAAGTTATGCAAATATGGTTCAAAAATGAAGAGAAGCAAGGAAGAATGTTAAGGAATTTACAGAAAGGTCTATTGGATAACCAATCAAATTCAATAATTATTGCAGTAGGAGATACTCAAATTGGTCCTGTGATTCATAACCTTATGAATCAAGATGATGAAGAGGAGATGAAGAAGAGGATGATGACGATAACGAGGATGAAGATGAAAATGGAGTGCATTGTGTATGAGAGGTTAATTACAATATTTATGGAAATTTAGTGGAATAAAAGGAAATTTTTTGCCTATGCTATCCAAATTGCTCCTTTCGAAAATCACTAATAATTACACCAAAACATTATTTTGAATTTTGAGAAATGTATATATTAGTTCGGTTTATTGTTTTTTTTTTGAACTTATATGTTTACTTGAGATTGATTGCATTGTTTGGTTTGTACTATTAAACTTATGTAAGTTGTTTATTTAAACATGTATGCTTGCCTTGCTTTTATGACATAGTTCAATTTGTTCCGAATAAATTGTTTGGTATCAGTGGTATTTCTTGAATCAATGTATAGTTGAAACAAGATGAAATTATAATTATGTATGTGTATATATATAGTTATCTTAGAAATTTTTTTTGAAATTAATATTTATTTTGATTCCATATATAACATTATCACATTTTATAGTATTTAATATGTCACATTTTAGGGGGAGTTTATTTTTCTTTACCCATTTTTGTTGATGACCAAGGGGGGGAAATATAAAATATGCATATACTAATGGGGTTAACCAATTTAGGGGAAGTTACATTATATTTTATATAATAAATATATTTACATGGTTGTCATCGTCAAAAATGGGGAGATTGTTAATACCACATATATTGATCTTGATGACAACAACTATATAAACATAGGTGCTAATGTTTTTCTAAGTTGTATAGAATATTTTGCTAACAGGTTTATATAAGTATAGGATAATCGATTTTGAAGACTGGTCAATAATAAGATTAGAGTTAAAAATTCAAAGAAGGTCAAGATATTTGAAGACTCATGGTTTAGAGATAAAGACAAGAAGAGTTAAATACTATAATTAATAGTTTAATAGACATTAGATTAATCTATTGAAGTCCTTGAATACCAATTTTTTTTGAATACTCTCTTAACAAAATAGTTATTTTATTTTAAAAACATATTTTTCCAAATATTTTATAAGAGCTATATACACATGTATATTATAGTATTTAAAAATTATGTTTAAATACTTTTACATGAGTTCAAATATTGTGACAACACTAGTACAAAAAGTGCATATTGCTTCGCCTCATTTGCATCAGTAAAAGGTAAAAGTAAAAAATGATGCAAATAGAACTATTTGCATCAGTTCCATCTTAATAACCGATGCAATTGGTACGTGAAAAGCAATAGGTAATAAAAAATCAAATTTGCATCAGTTGTCACCACCAACTGATGCAATTGGCACGTGCAAATAGTTTTAGTCGCATCGGTTTTAAATTCAACCGATGCAACTACATTAGTTTGCATTCATTTTCCATCGGTTTGCTACTCCAACTTTCATTTTCCCTCCCCTTAACTTTTCATTTCCCGCTTGGCTTTCATTTATCCCTCCACTTCCCCCGTAACCCGTTAATCAACACAGCCACGCAAATACCTCTGAACTCTCTAATTCACAAACAAAATTCTCAAATCCAAATCAATTTCAAATTCTCGTTTGAAAATCAAATCAATTGCAAATTCTCATTTAACGATTCGAATTGGGTTTGGAGGGGATGGAGTTGTGGTCGGCTGAAGGAGATGGTGTGTAGGATTCGAGTTGAAGCAGTGGTTTTTGATGAAATGAATGGAATTGAGTGCTTCGGTTGGAGTGTTTTGAGGTGTGGCGAGTAGATTGTTGCATTGCTGGTGGTTCTCGATTTGAGGTAAAGTGCGGAGGAGGTATTGTTTGTGGCGATTGAGGGTACTAGCAGCGGTGATTGGGGATGGTGACGACTTTGACTGCGGAGGTGCTCGATTGTGGTAGGAACAGGATTAAAAGCTCGGGCTTTTTTGTTTACAGAAGTAAACAAGTTAATTATGGCCGGTATAAGAGTTTACAGAGGTTCAAAAGTGAATGTTCTGTTAGAAATTTTTAGGCTTTTCTCTCCTCGGATTCTTCTCATGCTGGATTTGCCGGTAAGTTTATTGCCTTTTGAATCATTTATGTATGTATAGTTGGATATACCATGTTAACAAGAATTTTATAGAACTATCAAAATTTGGAAACTTGATTATAATCCTTACCGAGATAGGAAAAATTGACTGTTGGACAAACATTCTTGAGAAGCATACAAATCTAACTGTATGGTTTAATGTAAACTTACTGCATGAGAACCGACTGATTTAATAGATCTATGTTGCAATGAGTTTATAATTTGCCTTGTCTTTGATGAATCCGTCAAGTACGTAAATTGTACATATATAAAGATGCATGTCTGGTACTTGGAAGCTTTTGCAATTTGAACTGTGATTGTTATTTCTATACTAGTGGTACTTTTGAGTATTGACGATATGCTTATGTATTTGATTCAAACTTACTTTGATCTATTTATTTCAGGGTCAAGATCAATGCTAAACTTTGAAGAAGCATGTAATGGAAGAACCATTAGCCAACAGTTTTACATTCCTAGAGAGATAGAAGAGACGATCGAAGAAGATTTAGACAACTGCCTGCACCAACCAGAGAAGAAAAGAAGGTTATCTGCCACTCAAGTTCAGTTTCTTGAGAAAAGTTTCGAGGTAGAGAATAAGCTAGAACCCGAAAGAAAAGTTCGGTTAGCCAAAGAACTAGGATTGCAACTTAGGCAGGTTGCAATATGGTTTCAAAATCGTAGGGCGAGGTGGAAAAACAAGCAGCTTGAGAAAGATTATGATGTGCTCAAATTAAAATTCAACGCTTTAATGGTCGATTATGAGAGTATGTTAGACGAGAAGGAAAAGCTTAAAGAGGAGGTATGGACCTATATCTCTGTGGTTTTTGTTGAATATATGCTTAGAACTGTAACCTTTGTCTACTACTTGTTAAGCATTATCTTGTTTTCATTATGATTCATAACGTTGCATTTGCAATGGAGAAAATGTAGGATAACTAGTGACCTCTTATTTTCATTATTTTGTCCGGAGTTTATAATGTCAGGTTAAGAATAACTTACAGTATATATTTTTTATAACTGAACTAAAGAACCGATGATCGGTTACAATTTACAGATCCAATTACTAACATATGCAAATACACTCTTAATATATTATTTTATATTACTGCAAAAAATATTTGGTTTTAAATTAGTTCATATAACAATTAAATGATAGAATACATTGCTATTGTTTGTCTATCATTATGAAATATATGTTATATTGCAATATTATACTAGCAAGTGGATAATCTTGAGAGATCCATAAAACAGTAAGAGTGAAATTTACTACATTTAGACTTCACAAATGCAAAGCAGGTTATAGTTACGATTGTGTTAGCAGTATGTGCTATGATAATAAAAGTTGTTATAATCATCACCTGTGATGATCATATTTTGATAACAGCTAAAAATGTCATTAACTAAAAAATTAATAAAAATGCCCCCTTCCAGTCGAAGAACCTCTGGCTTCACCCTTGTTGTCACCCTTTCTGAGCTCCACTGGTGAACATGAGTAAAATATACTGTGATGATAAATAAATCTACAGAGTAAAACAAATTTGAAATAAATCTGCAGATTAAAACTAAATCATGAACATTGTTTCTTATGTTATGTAGATCATAAATAGTCCACATGAGCAAAATAATGGTACCGATGAATGCTCTTCATTTATGGTCCAAAAAGGAGAAAAAAACGCTATGTTAATAAAATATAACATCCAAAAGTTTGATAAAAATTGAAAATAGAACATCATGCCAAGAGAGACATGTAAAAATTACTTACGCAAAACAGTCTTCCCATACTAAATTCATTCATTCTTATTTTTGCATGCAGGCAAAAATGCTCCAAGAAGAGAAGAAGTTCCTGGAATCTGTAAGTATTTACACCTACTTCTCCACAAAAAAAAGTAAACACGTAAAATACCCACTCACCACACAGGTGAGTACACATACTGCAGGCAAATAACACAAGGAGAAGGTAAACCAAACTAACTTATGATTCATTTGTGAGAATGAGGTAATGGAAAACGAGCAAACAGTAGAGAAGGACAATGAAGGCAGGCCTGAGCAGAACTGCATGGTATGTGAAAGTTCAGCCCCCGAGAATGTCAACACTTCTCAAGGAATATGGTGGCAGCCATTGCAAAATTTTCTGGTTTCGATGGACATGTAACCGTGAATATACAAGACTAGTGTTTCTTGATAGCACTGTGATGTGTGTCTTCACTGATATGTATCCAGTTTGAGGGCATATATACGCAGGTATGGCTACCTTAGACTCTAAAAGCCCTTTGCATAATGGAAAATTTGTAAGAAAATATTCAGTTATGTTCTTAACACAGATTCATAGAACTAATTAAGTAACGCGCATCTTTCGTAATTTAAGTTGTAAAGGTTCGTATTTGTATACAAATATTTGTGAGCAATATTTTTTTCTTGCACACGATAGAAATATTTTTAATGTACCAAGCATCTCTTTTTGTGATTTGTAATTTTTTTTCAAAAGAATGTTGTAGTCATATGGAATTTTTAGGGCAAGTTTTATGATTCGTCCTTAACTTTGGTAATGAGATTGGGAAGCTATTCCTTCTATTATATATAATTGTTAAAATGTAACCGTTTTTACCATATCCAAGGTAAAAATATAAGGAAAATGAAAAGACATCAAGTCATGGGTAGGTTTTAAGGGTCATGCACAAATGATACATTTTGAGGGATACTCAAGTTTATCCAAGGGATGAATCTAAATTACAAATCCATAATATGGATCCATAAATTACAGTTTAGTACCTCTGAAAATTTGACCCTGAGTTGTGTAGTAGAATGGTCAACTAATTATTCCTCCTAGGGAGAACCAACAAGGACGGGGTGGTGCTAACAGTCTTAATTTTCTCAGTCTATCAGAACTCATAAATTTATTCACTAATTGTTTCAAGTCCTGGCACCGATAACTTGTACCATTACTTTAAAGTTCATATTTTTTTTATATCAGTTGCTAGCGCATCAATTTAATTATGACTTTGCATTATTTATCCCACTTTGTAAGCATGTGCTAAGTTAAAGGTTGATTTGAAAATCCAACTATGCATATTTTGTGCTAATGTGACAAGCCATAAAACATAGATTTTACAGAATCTGAAAGGATGGAGAAAATGTAGGATAACTATAAACGATATATGCAGGACAATCACAGTGATTATAATGTCAGGTTAAGAGTATCATTGCAATAGCTATTTTCTGTTGGAGCTTAAGAGTAGAAGCCACCATAATCACCAGTTGCAACAATCCATCTGTCCTTTTTAGGTTTGTATCTATTTATCGTTTAGATTTGTAAGTAGAGAACCTAAATGATGGTTGAAAGGTAAGTGAAGTGAATTTGGGAAGGGTGGTTTGCAATTAAGGGCAATCCTTAATTTGAGCAGGTATGTGGAATTAAAGTGGTTTCTGGTCTTGTTTGGTTTTGGGTATGGCGATTGTGGGTTTATGTAAGTTGATGATGGATTAAAGTATGTTGATATTTGAAGTGTTGTATATGGCAGTGGTGATCAAGTGGATATGCAGTCTTCAGGGTGAAGAGAAGTTGTTGAGTTGATGTTGTAGGCAGAGGTATGAGTGTGATTGTGGAGCAGTTTGGGGATTGCTTGTTGATGTTAGTAGGGTGGTGTATATGTGATGATTGTGTGGTTAAGTGGTTACTTGTTGAAGTGTGCACAGTGATGTACAGGTGGTTGGAAGGCATTGTTTTGTAAAAGAAATGAAAATGAAACAGTGGCACAACAACTGATTGATGGAAGGAAGTTAGAAGTAGGCAATGCAGTGGTGTTGTAGAAGCACGCAGTGAGTTACTGACAGAGGTATACTGATAGTAGGTAGTGGGATTTTTATTTGGAGGAAGATTTGATGTGCAGTGCACTAATAATAGAGGGTCAGTGGAGTTACGTATGTGGTGAAGCAGTGAAGTGGTATAGATGTAGCTGATGTAGGCAGAGGAGGAAATGATGGTTGCATAGTTTGAATGAGGCAAGATGATGATATGTGATGGTTTGGGTTGAATGAGAGGAGTGTTTCAGACAGTTTTTTATATGCATAGGAGCATATAACAATGCAGGTTGGTTTTATGTGGTCAGATGAGTTGAAAGACCTTGAAAAGCATGGCCTGTTCAACCGTAAAGAAATTGTTGACATTGTCAAGCATCGTCGCGACTTTGAGTATCGAATCAAGCGTCCTTCTCCATTGAAAGAAGACTTTTTGAATGACGACAGGCAGTTGGATGGTCAGGTTTTGCTGATAGTTTTTAGAGATAGCTATTGATGGAGGTAGTGGCTGTTAAGAATGTTAGGTGATTAATGTGGTATGTTTGGGAGGTGTAAGTGTGTGGTTACAGTAGGCACTGTACACAGAGGAGGTTTCAGGTGGAGTGGAGGAGTATGTTTGCATGGAAATGGTTGAGGGATATGATGTGTAGTTGACAGAAGTGATATTTATTTGGATGGTGGGTAGAGGAGTGAAGCAGGAAGTTTGGGATGGAAGTTTATATAAAGAGTGACTGTGGTTGGAAGTAGTTTGAAATAGCACAGTGAATGGTGCAGAAAGCAGTTGTAATGGGAGAGGAAGTGGCAGAGAGAGGAAGTTGGCAGTTTTGATGTTGTGATATGGTTGTTGAAGTTTGTATGTCGGAGAGTTGTAGGAGTAGTGGAGGGAGTATGGCAACAAGTTAGAAGGAGTTGCGATGGATGTTGAGAGGCAAGTGGTAAGGGTATGTTGTTGGAGATTTGTGGCAGCAAGGAGCAGTGTTGAGTTAGGGAGGTTTTGGTGGAAATGCAGTGTAGTGAATGATTATGTACTGTATATGGTTGGTCAGAGTGAACGAATTGGAGGTAGTGTTGCACTGATGTGAAGGCAGAGAGTGAACTAGAAGTGGAAGCAGAGGGAGGTGATGTGATATTGGGTGATTGGAGAATGAAGTGAGGCTGCATGGAGATTGTTGTAGGAAAGTGGATGCAGAGGTGTGACTGAGTTTGTATGTATGAAGATGGCACAGATGGGTAGAAATGAGGAGAGGAAGTGGTTGATGAGCAGGGCGGTGGGAGGTTGAAAGAGGAGATGCAGCTAGTTGTTGTGATGGTGACAGCAAGGATGGTGGTGAACTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252211.1	4.1e-43	homeobox-leucine zipper protein HAT5-like
Swissprot	A2X980.1	3.9e-22	OsHox16
trEMBL	A0A5P1FEN5	3.0e-43	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G01470.1	48.45	6e-33	139	ATHB-1;ATHB1;HAT5;HB-1;HD-ZIP-1	homeobox 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g252539	AT3G01470.1	161	69	4	150	303	31	184	48.45	6e-33	139
g252539	AT4G40060.1	170	76	5	181	346	44	205	48.24	2e-31	134
g252539	AT2G22430.1	91	31	0	193	283	61	151	65.93	1e-28	124

Ortholog group

Species	Genes
Allium cepa	g103561.t1; g121794.t1; g13156.t1; g190300.t1; g199438.t1; g252539.t1; g324522.t1; g361130.t1; g41153.t1; g492566.t1; g55488.t1; g59663.t1; g84342.t1
Allium fistulosum	AfisC1G01481; AfisC1G02424; AfisC1G02864; AfisC1G05033; AfisC1G05156; AfisC2G01313; AfisC2G08452; AfisC3G00906; AfisC3G02637; AfisC4G00626; AfisC4G02622; AfisC4G06244; AfisC5G05451; AfisC6G01716; AfisC6G02991; AfisC6G04767; AfisC6G05728; AfisC7G02966; AfisC7G02969; AfisC7G04763; AfisC8G01572
Allium sativum	Asa2G00783.1; Asa3G02473.1; Asa4G00625.1; Asa7G01405.1
Arabidopsis thaliana	AT1G27045.1; AT2G22430.1; AT3G01470.1; AT4G40060.1; AT5G65310.1; AT5G65310.2
Oryza sativa	LOC_Os08g37580.1; LOC_Os09g21180.1; LOC_Os09g29460.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	194	248	55.3	3.9e-15
PF02183.15	HALZ	Family	249	285	43.2	2.9e-11
PF08640.8	U3_assoc_6	Family	341	383	49.0	4.4e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006417	P	regulation of translation
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009893	P	positive regulation of metabolic process
GO:0009965	P	leaf morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010608	P	posttranscriptional regulation of gene expression
GO:0010628	P	positive regulation of gene expression
GO:0010629	P	negative regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0017148	P	negative regulation of translation
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032269	P	negative regulation of cellular protein metabolic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0034248	P	regulation of cellular amide metabolic process
GO:0034249	P	negative regulation of cellular amide metabolic process
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048523	P	negative regulation of cellular process
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051248	P	negative regulation of protein metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network