result

Gene information

Detail information of g252829

Location

Gene	Chr	Start	End	Strand
g252829	Scaffold_57731:HRSCAF_440817	173429	177543	+

Sequences

CDS

Protein

Gene

>g252829.t1
ATGGAGCAACTGTGTCAAATAGGAGAAGCCTTGGGAAACCTGAAGGTTATCATGGTGTTCCAAGACGAAATCCGAATAAATCAAAGACAATGCTGCCTACTATCAAACGCTTATAACGCAGCTTTTGAAATAATAACAGATGAAATAAAGCACAACTTAAAATTCGAAGAAAAGCTCACAAAATGGGATGCACTAGAAAACCCATTAAGGGAGCTTCATAGGATCATCAAAGAAGGAAAGCAATACATAAGGCAGTGCATAGAAACAAAGGACTGGTGGGCTAAGGCCATAACTCTGAATCAAAACATAGACTGCATTGGCTTTCACATTCACAACTTATTGCTATGCATGTGTATTGTACTAGAAGCAATTGAAAATGCAGGTGAAATTTCAGGTTGTGACCATGAGGTAATTTATAAGAAAAGACTTATTCTCTCTAAGAAATATGACAAAGAGTGGTTGGACTCGAATCTATTTCAAATCAAGTTCGGAAAAAATTACTTGGTCTCTCAAGAAATGTGTAAAAATTATGAAAGTGTTATGAAAGAGGACAAATGGATATTCTTGGATGCTGTCGCAGATAAAAAGAATTCTTCTCCACTGTCAAAACATGATAACCAACTTCTTGAACTTTTGTCATCTCCTAAAGGGAAGTTATTTCCAGTTTCAGTACTGGTAAATTCGAAAGATTACCATGTGAGGAAAAGGCTTGGAAATGGAAATAGATATAAAGAGGTGCAATGGGCAGGAGAGAACTTTGTACTAGGGAGATTCTGTGGAGATGTAAAGCAATTGGCAATGGAGATATCTAACATATCACGGATAAGTCACCCTAATGTGATGAGTTATATGTATGCATTTTCGGATGAAGATAAAAAAGAATGCTTACTCGTTATGGAGCTCATGAATAAAGATCTTTCTAGTTACATAAAAGAGATTTGTTGTACAAGGAGAAGGATTCCTTTTCCTCTTATAGTGGCAGTGGATATTATGCTTCAAATTGCTCTGGGTATGGAGTATCTGCATTCTATGAAGGTTTACCATGGAGATTTGAACCCTTCTAATATTCTTGTAAGAAGTAGAAATTCATCACCTGATGGATATTTGCATGTCAAAGTTACTGGGTACGGCCTTTTAAGCGAAAGTTCTAACTCAAAAGGGACGAGGAATTGTCCAAGTTATCCATGTATATGGTATGCTCCTGAAGTTTTAAATGAGCAAGAAAAAACGGTAGTTGAGAATTGGTCGTGTAAGTATTCGGAGAAGGCGGATGTTTATAGTTTTTCGATGATATGTTTTGAGCTATTAACTGGGAAGATACCATTTGAAGAAGATCATTTACAAGGAGAGAAAATGAGCAGGAATATAAGAGCAGGAGAAAGGCCATTATTTCCATTTCCATCGCCAAAATATCTTACTAGTCTAACGAAAAGGTGTTGGCAAACGGATCCCATGCAAAGGCCAAGTTTTTCTTCTATATGCCGAGTTCTTCGATACGTTAAGAAGTACCTTATTGCGAATATAGATAGAAACCAACATGAGATACCGGGTCCGAGTATCGACTACTTCGATATTGAGGCTAGCTTATCGAAAAAGTTTAAGGTTCCAGACTCGATGAATGTGTCTGAGATTCCATTTCAGATGTTTTCTTTTAGAGTGGTGGAGAGGGAAAAGGCTAGTGTGAATCTAAAGGAGAAGAGTTCAGAGTCAGGAAGTGAAGGGGCGTCTACTTACGATGAAGAAAATAATGTATTCAACTTGACCATGATTCAAGAATATGCACTTTCTTCTCCATTGCCATCACCCATTTCTAAGTCATTGTCTCATTCTAGTTTAGATGTTTACAAGTCTTCTCCCAGGAAAGTAAATTCAAAAGCCAACAAACAGTCAGGTAAAATTGCATTTTCTTTTCTTTCATATTTCAGTGTGGAATTAACATGATCAACATTGACAATATGTAATCATGCCTACCCATTTTTTTAAGATAATTGCATTTATTTGTTATTTATTTTCTGGAGTTAATATGTATGCCTAGAGGCTCAAATCCAAGAACCTCTAATAATTTATACTAGGTGTACTGCCATTAGATGTGTGATTCTTGGCAAGAATCTTTTTGTAACTCTATTTACAACAAATGATCTCAATATGTGATTTGTAGATTTCAAACAAGAAATACCCCGTTACAACTTTTAAACTTTTTTCACCATTCGCATGGTGGAGTCAAATGCTCTTCCCTTTTTCAAGACAAGATCATGTATTCTAAGAGCATCTCCAAGGGATTCAAGGCTTAATATTTGGTGCTTGAATATTAAACCTTGAATTTGGGTGAAAATTGCCAACGGTTAGATGACTATTTAATAGATATTTATTTAATATGCGTTTGACCATGGACGCTTATTTAGTAGACGTCTAATTCTGAGTTATCTATTTAATAAACATCCGATCAACTTTGAATATAACTTTTCTTCCGATGGAGATGTCTTTCTTCCATGTTGAATCTAAAGCTTGAATTGTCTTCTGTTGGAGATGATCTAGTATAAAACCAGAGTAATGAAACACCGATATAGTAACAAAGATTTTAATGGTTTTTGGCCAACAATGGATTTTAGCATATTATATTCCGATGAATTATGATGTCCGTTAAAACCATTGATTTTGTAGTTGGATGTTTTCATACACTGGTTAAGATAAGAGTAAACATGGTTCAAGATTCCGACATATTTGCCAAAGTCTCGCCCATTTCGATCCGGTTTCGACGTACCGGAATTTGCCTCGAAATCTGTTTGGCGTAATACAAGAGAGAGAAACATAAATGTGAGGGAAAAAAGAAGGCGTGCTGCGAGTAGAGAAGGCGATGTTGAGAAGGGAGAAAGACGCAGCAAGTAGAGGGATGGAATATTTTTACTTTTTTTTTTGGGCTTTTCATTTTCTTTTTCTTTCAGCTGCCAGCAACAGTGATTCAGTTAGGTTTGGAATATTTATACTTTTTTGGGCTGGATTGGTTGGGCTGGGTTGTCAAAAGCATCAAGTAGTTATTAAGTTGATAAAAAATTATGTGCTGAAATTTTTAATTAGTATGTATTATAAGAAAATAAACTATATTATTTCATTATATAGCAAATAGAATAAAAATTAAAAATAATTTGTATAAACTTTAGGTCAAGCTCAAACTATTTATATGAATTTGTGTTAATTTACATATTTACAAAAAAAACTACCGGAATTCACAAAACGGAATTAAAATGGAATTTTCGAAACGAAACCGAAAATTTAAAATTTCCCGATGTCCAGAACAGAGATGGGAAACAGAATTTTAAACATCAGTAGAGTGATCATATCCCCTCTTTTACATGTGAATAAAATCGTTTTCCCTTCTAACACCCTCTTAATTCGTTTTAAGAGCATCTTCGACAGCTGCTAGAAATAGAGAATTGAGGGCAAATCTTCTTTTTAATTTGTTTCTCCATGCTCTAGCAGCGGCGATTCAAGCGTGGGAAAGTAAATAAAGTGGGGCTTTGCCGTATTTTTTATTTTTTGAAGCGGCGATCTATACATGGGAAATAGATTCCCGTTTATATATTTAGCGGCATTTTTGAATGTCGTTTAGGCTGCAAACGGTAATCTGTTTACCGTTTATAGTAAAATCTTTTTTTAACTTTGTTTATGCTATAAACGGGAATTTGTTTGCCATTTTATAGGTTTTTCTACAAAATTATTAAAAAAAAAAAAAAAAAAAAATCCATCACCTGCTGCTGAAGGAGTGGGGTTTTGTCCCCTTTTTTTCAGTTCACCACTGTTGTTTTTAAAACAGCCTGCTAGAGACGCTGTAATGCCATACAATTCCTATAAAATTGGGAGGAATTTCAAAGTTTAGATATCATTAGTTTTAACTATTATGCCTTGTGAATAATAAGAGTGTTTCAATGTCACCTTGGTTTTCAGGGCAGAGCCAACCAAAAGCAAAGGTGGTGAGGCCGCCTCCACTGTTAACACTTCGAGGAAGAAGTTTAAGACTGAGATCTGACAATAGTAACCACTTGACACCTCCAGCAGTTATGACTCCAGGAAGGCGAAGGATATCTGGGAACAAGTCAGATTCAGAGTTATTAAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249175.1	2.5e-259	dual specificity protein kinase shkE-like
Swissprot	P25848.3	2.1e-37	Protein kinase
trEMBL	A0A6I9QWS7	4.4e-242	mitogen-activated protein kinase 8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G64300.1	47.30	0.0	662		Protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g252829	AT1G64300.2	723	336	13	1	685	1	716	47.30	662
g252829	AT1G64300.1	723	336	13	1	685	1	716	47.30	662
g252829	AT5G41730.1	716	341	12	1	685	1	710	47.21	634

Ortholog group

Species	Genes
Allium cepa	g168513.t1; g252829.t1; g362944.t1
Allium fistulosum	AfisC6G06025; AfisC7G01683
Allium sativum	Asa3G03502.1; Asa8G01392.1
Arabidopsis thaliana	AT1G64300.1; AT1G64300.2; AT5G41730.1
Oryza sativa	LOC_Os01g43350.1; LOC_Os05g50830.1; LOC_Os05g50830.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06760.8	DUF1221	Family	21	228	293.6	6.9e-88
PF07714.14	Pkinase_Tyr	Domain	263	496	130.1	8e-38

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0016020	C	membrane
GO:0005623	C	cell
GO:0044464	C	cell part
GO:0071944	C	cell periphery

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network