result

Gene information

Detail information of g255935

Location

Gene	Chr	Start	End	Strand
g255935	Scaffold_58172:HRSCAF_441258	290721	293602	+

Sequences

CDS

>g255935.t1
ATGTCATTCGAGAGCCGTCCATACGCGCTATATAAGCCGATCTATCTTCAATTCTTATCTGAGTCTTCAAATTGCTTTGATATTTCTTTTTATTTTGCTACTCTCCAACCGATCGCATCAGTTATTTCGCGAATTGTAATATTCACCCGATTTAGGAGATTTAGCCTATCAACAATGGTGTTTAAGCAAAACAAGCTTCCATTCGAATCCGATGACTCTGTTTCTTGTCAGCTTGCTTTCCACCACATGAAACAAGTGGAAAGTGAAAATCAGTTAGTACCTTCGGTTTGCTACAATTTTCTTGAGAAGAAATATATCTCAGATGGATGCCCACCGGAGGAAAATAAGAATGTTGATTTTGAAGCTATAAAGCTGGAGAATAATAAACGTCCTCTCGACGAAGAAGACAATCTTGAAGCTTCTACTAAGCGCAGAAAGCAGTTAGATGAAGATTTTCCCAACTTCAGCGAGCTTTCATTTTCTAACTTTCTCACCGACGACACAAGTATAAAAGACACTTCTGTTTCTAAGAGGTCTAGCGATTCATATGACGGAAGTTTCAGCTTTCCAAGATTCACATTCAGCGGCCTCGATGACTACAGTGCTCAATATGAATCCCCTATTCGAATATCTTCGTTTCCTGGATATTACGATGATTCTGTCAGGCCAGTTGTATACAACAATGAAGTGGAAGAAGAACAGTCTTCTATTTTTGATTACCGTCCTCGAAAACCTGTTGCCATAGGCCGTAATCATCAAGCAGAACTACCTTCACTGAGTCCCAAAACATCCTGGGCATCTAATGAGTTAACTGAGATCAGTACTGAAAAATTGACCGCTTCACATAGAAATCCTACTTGTCATTGTCTGGATGCTGGCTCTATTAGATGCGTGAGACAACATATAAAAGAAGTAAGAGAAAATATCGAGAGCATTATAGGCCATGAGCGATTTTCAGAGCTAGGTTTATCTGAAATGGGAGAGTCTGTTGCTTTAAAGTGGACAGAGAAGGAAGAAAGCTTGTTCCATAAAGTTGTCATATCGAACCCTGCATCCGTAGGGAGGAACTTCTGGAATGAGCTTTATTGTGCTTTTCCATGTAGAAGCAGCAAAGAGATTGTTAGTTACTACTTCAATGTGTACATGCTGAGGAAGAGAGCAGAGCAGAACAGGTTTGATCCTTCTAATGCAGATAGTGATGATGATGAGTGGCAGCTAGAAGATGATAATGAGAAAGATGGCTCTGCAGTTGAATCGCCTGAAGATGGTTGTGTTGGGATGTACAGTGGAGTTCATGTTTGTGACGAGGGCAGTGATGAGTACGTTAAAATAGACTTTGGTGCCAAAGATGTGAAGGATGATACATGCACTTCATATGAGGAGCTGCCTAAGGCTCATAAGGTTAACGTTTTGGATCATGGTTTGAGCTATATGGACGGTCGTGATTTCTTCTCTTATCATTGTGGGCATGTTCCTTGGGACACGATGAACTACGCCACTTTGCTGGATAAAGAACCTGATCTGCTGCCGACGAGTAATGTGATGGAACAGTTTGGGGATGAAACATGGGAGTAG

Protein

Gene

>g255935.t1
ATGTCATTCGAGAGCCGTCCATACGCGCTATATAAGCCGGTTTAAAAGAAACGAGGTAATTCGCTAAAATTAATTAAAACATCGAGAACAATCTTTATCTGAACCCTAAAACATGCTTGATAGGCCCTATTAAAATTTAACATTAACATATGCTAGCCTTTTAAAAAAAATGTGTATATATATGTATATGTATATGTATATATGTATATGTATATGTATATGTATATATACACACACTAACACACACCAAACTGCCGAAAATCAAGTTCAAAGTAGCCGAAAATCAAAATAAAAGTCGCCCCTTTGCCCTCCTTTCGTAATTTCGATTTTAGATCTATCTTCAATTCTTATCTGAGTCTTCAAATTGCTTTGATATTTCTTTTTATTTTGCTACTCTCCAACCGATCGCATCAGTTATTTCGCGAATTGTAATATTCACCCGATTTAGGGTTAGGGCTTCGATCAATTTGGGGCTTTCTGGATTTAGCGTCGATTTTGTTCTGAATTAGAGATTTAGGTTGGTTTTTTTGCGATTTGTCTTTGCCCTCTGTCTATTTCTCTTGATTTGGTCTGAGTTTCAGTTTTACATCTAGGGTTAGGGTTTCAATTTTTAGCTTTATTTTGTTTCAATTAGGTTTCAGTTTGTCTTGAACCTACTATTCCCTTTCAATTTTGTGCTATCTAGGGATTAATTTTGAAAATTTTATTTGAAATTTAAATATTATATTTGACCATTGAAAATTGCTATTTACGGTTTTACCCTTTTAAAAAATTATTTACACATGTCCTCATTTTTCATTGCTCTACCCTACTTCGTCTGTCTCAATTCTCTACTAGTCTATTGTTCGTAGGTAATCCATAAATTTTAAAGTTAAAACCCTTTATTGTTCTGAGTATTGCTGCAGTAATGCATGTTATGCCTGAGCTTGTCTGCCTTGTAATATTTGCTAGTATATAAGCATATGACCAGCTATTGTAGCATCCAATGACCAAATACTTTCTTCTAGGGAGTTAATTTAGGATTACTGTCCACTGAATTTTTTTAATCTTTTTTGTAGAATGTTTGTTATTCATTATTATCGTATTTGTGTATCACGATATGACTAAAAATTCTGACTGGTTCATGAATACTTTCTCCATTGCAGCCTATCAACAATGGTGTTTAAGCAAAACAAGCTTCCATTCGAATCCGATGACTCTGTTTCTTGTCAGCTTGCTTTCCACCACATGAAACAAGTGGAAAGTGAAAATCAGTTAGTACCTTCGGTTTGCTACAATTTTCTTGAGAAGAAATATATCTCAGGTAAAAATTTACATGCAAATTTGGTTAGGAAAGAGAGATATGTTACTTACTAGTCCTTTGTTTTCATACATGGTATAAAGATGGATGCCCACCGGAGGAAAATAAGAATGTTGATTTTGAAGCTATAAAGCTGGAGAATAATAAACGTCCTCTCGACGAAGAAGACAATCTTGAAGCTTCTACTAAGCGCAGAAAGCAGTTAGATGAAGATTTTCCCAACTTCAGCGAGCTTTCATTTTCTAACTGTAAGCAATAGAGTGCTTGTTCATGTTTTATATATTTTGTTAGAACATGTTAAATGGTTAATCCTATGAGTTTGGATGAATGGTGCATATGTCAGACTATTTAGCACTCAATTATTTCTCTCCCGTTACCAAAATCCCCACATGATAAAAGGCTTCTGCTCAAACTTGTAATACAATTTTGCTGCTACCTGCTTTTGAAATTTAAGATGTAAAATCTATTAACGCCTGCATTGGATATTTGTTCAGTTCTCACCGACGACACAAGTATAAAAGACACTTCTGTTTCTAAGAGGTCTAGCGATTCATATGACGGAAGTTTCAGCTTTCCAAGATTCACATTCAGCGGCCTCGATGACTACAGTGCTCAATATGAATCCCCTATTCGAATATCTTCGTTTCCTGGATATTACGATGATTCTGTCAGGCCAGTTGTATACAACAATGAAGTGGAAGAAGAACAGTCTTCTATTTTTGATTACCGTCCTCGAAAACCTGTTGCCATAGGCCGTAATCATCAAGCAGAACTACCTTCACTGAGTCCCAAAACATCCTGGGCATCTAATGAGTTAACTGAGATCAGTACTGAAAAATTGACCGCTTCACATAGAAATCCTACTTGTCATTGTCTGGATGCTGGCTCTATTAGATGCGTGAGACAACATATAAAAGAAGTAAGAGAAAATATCGAGAGCATTATAGGCCATGAGCGATTTTCAGAGCTAGGTTTATCTGAAATGGGAGAGTCTGTTGCTTTAAAGTGGACAGAGAAGGAAGAAAGCTTGTTCCATAAAGTTGTCATATCGAACCCTGCATCCGTAGGGAGGAACTTCTGGAATGAGCTTTATTGTGCTTTTCCATGTAGAAGCAGCAAAGAGATTGTTAGTTACTACTTCAATGTGTACATGCTGAGGAAGAGAGCAGAGCAGAACAGGTTTGATCCTTCTAATGCAGATAGTGATGATGATGAGTGGCAGCTAGAAGATGATAATGAGAAAGATGGCTCTGCAGTTGAATCGCCTGAAGATGGTTGTGTTGGGATGTACAGTGGAGTTCATGTTTGTGACGAGGGCAGTGATGAGTACGTTAAAATAGACTTTGGTGCCAAAGATGTGAAGGATGATACATGCACTTCATATGAGGAGCTGCCTAAGGCTCATAAGGTTAACGTTTTGGATCATGGTTTGAGCTATATGGACGGTCGTGATTTCTTCTCTTATCATTGTGGGCATGTTCCTTGGGACACGATGAACTACGCCACTTTGCTGGATAAAGAACCTGATCTGCTGCCGACGAGTAATGTGATGGAACAGTTTGGGGATGAAACATGGGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020277159.1	3.5e-80	uncharacterized protein LOC109851439
Swissprot	Q9LDD4.1	2.0e-19	ARID and ELM2 domain-containing protein 2
trEMBL	A0A199V6X7	3.9e-57	AT-rich interactive domain-containing protein 2 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03470.1	37.43	2e-48	190		ELM2 domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g255935	AT2G03470.1	342	157	10	230	523	107	439	37.43	2e-48	190
g255935	AT2G03470.2	342	157	10	230	523	106	438	37.43	2e-48	190
g255935	AT1G13880.1	441	224	14	129	524	4	418	33.11	1e-41	168

Ortholog group

Species	Genes
Allium cepa	g251509.t1; g255935.t1; g255950.t1; g431580.t1
Allium fistulosum	AfisC1G08990; AfisC2G07602; AfisC3G02184
Allium sativum	Asa2G05292.1; Asa5G03308.1
Arabidopsis thaliana	AT1G13880.1; AT1G26580.1; AT2G03470.1; AT2G03470.2
Oryza sativa	LOC_Os03g31230.1; LOC_Os03g31230.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network