result

Gene information

Detail information of g259809

Location

Gene	Chr	Start	End	Strand
g259809	Scaffold_58659:HRSCAF_441745	367763	369112	+

Sequences

CDS

>g259809.t1
ATGGTTCCAGCTCTCCTCGTTCACATTCATCATCTACACGAATGGGCTACTGACATCCTTCGCCAAAACGGAACTTTCAAGTTCTACGGTCCGTGGTTTCTTGGCATGGATTTCATTGCTACCTCCGACCCAGCCAACGTCAACCATATATTCAACGTAAACCATGCAAACTACCCGAAAGGCGATGAATTCCTTGAAATGTTTGACGTACTTGGTGATGGCATATTCAACGCTGACCATGAGTCCTGGAAAATGCAAAGGAAAATGGCTCATGCTGTCATGTCCACCCCAAATTTTCGTGCTTTCGTTGTCAAATCGAGTCGAGACAAGGTTGAAAATGGACTAATCCCTCTTGTTAAAGAACTAGCTCAAGAAGGAGCAGTCTTCGACTTACAAGACATCTTCTTGAGACTTACTTTTGACATGACATGCATTTTAGTATTCGGAGTCAACCCAAAAGCCCTGTCTAAAGAATTCCCCACTGTTCCTTTTGCACGAGCAATGGACAACGGCATGGAAGCTTTGTTCTACCGCCATGCCATGCCTCCTTTTTGCTGGAAGTTTCTGCGGTGGTTGAGTGTTGGAAGGGAGAGGAAATTTCTAGAAGCCAGGCAAGTCATAGACGACTTCGTAGCACAAAACATCGCGGTGAAAAGAGAGAGCAAAATGTATGGAGAGGACATTCTGACATCTTACATCAAAGCTGAAGGCTCTATCAACGATGACAGGTTTCTTAGGGACACAGCTGTGAATCTAATGCTTGCAGGAAGAGACACCACGGGTGTCGCACTTTCTTGGTTCTTTTGGCTGTTGTCGAGAAACCCAGAAGTAAAAGTTAAACTACTGGAAGAAATAAATCAGAATTGTACAAACAAAGAATTTGATTTTTCGAAGATGGTGTATTTACATGCAGCGTTGCTGGAGGCTTTGAGGTTGTACCCTTCAGTTCCCTTTGAGCACAAAGCGCCATTGAAAGAAGAGGTTTTGCCGAGTGGGCATAAGACTGTGGTTGGGGAGAGGATACTGTTTTTGACATATTCGATGGGAAGAATGGAAGGAGTTTGGGGGAAGGATTGCTTGGAGTTTAGGCCGGAGAGATGGATAACAGAGAAGGGGAATATAAGGCATGAACCTTCTTATAAGTTTTTGTCGTCATTCAACGCAGGACCGAGGACTTGCCTAGGAAAAGAGATTGCGTTCGTGCAGTTGAAGACGACGGTGGTTGCCATGATGCGTAACTTTGACGTCGAGGTTGAGAAAGACTGTGTTGTCGAACCCAAGCATTCGATCATACTTCATATGAAGAATGGATTGATGGTGAGAGCGAAATGGAAGGAGGGCCGTAAATGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259904.1	1.4e-178	alkane hydroxylase MAH1-like
Swissprot	Q9FVS9.1	1.1e-116	Protein MID-CHAIN ALKANE HYDROXYLASE 1
trEMBL	A0A5P1F304	1.0e-178	Cytochrome P450

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G39490.1	48.31	9e-129	457	CYP96A10	cytochrome P450, family 96, subfamily A, polypeptide 10

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g259809	AT4G39490.1	472	211	6	1	440	41	511	48.31	9e-129	457
g259809	AT2G23180.1	467	219	5	1	440	42	507	47.11	4e-125	445
g259809	AT4G39480.1	458	203	6	12	440	52	508	49.13	1e-123	440

Ortholog group

Species	Genes
Allium cepa	g111802.t1; g247046.t1; g247067.t1; g259809.t1; g259833.t1; g329788.t1
Allium fistulosum	AfisC3G04430; AfisC4G06585; AfisC4G06587; AfisC4G06664; AfisC4G06667; AfisC4G06670
Allium sativum	Asa2G03783.1; Asa5G05592.1; Asa5G05595.1; Asa5G05625.1; Asa7G07556.1
Arabidopsis thaliana	AT2G23180.1; AT4G32170.1; AT4G39480.1; AT4G39490.1
Oryza sativa	LOC_Os01g08800.1; LOC_Os01g08810.1; LOC_Os03g04530.1; LOC_Os03g04630.1; LOC_Os03g04640.1; LOC_Os03g04650.1; LOC_Os03g04660.1; LOC_Os03g04680.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00067.19	p450	Domain	26	434	186.4	7.4e-55

Gene Ontology

Accession	Ontology	Name
GO:0000038	P	very long-chain fatty acid metabolic process
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004497	F	monooxygenase activity
GO:0005783	C	endoplasmic reticulum
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006082	P	organic acid metabolic process
GO:0055114	P	oxidation-reduction process
GO:0016491	F	oxidoreductase activity
GO:0006629	P	lipid metabolic process
GO:0006631	P	fatty acid metabolic process
GO:0006633	P	fatty acid biosynthetic process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0008150	P	biological_process
GO:0008610	P	lipid biosynthetic process
GO:0009058	P	biosynthetic process
GO:0009698	P	phenylpropanoid metabolic process
GO:0009699	P	phenylpropanoid biosynthetic process
GO:0009987	P	cellular process
GO:0010025	P	wax biosynthetic process
GO:0010166	P	wax metabolic process
GO:0010345	P	suberin biosynthetic process
GO:0012505	C	endomembrane system
GO:0016053	P	organic acid biosynthetic process
GO:0016705	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016713	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen
GO:0019438	P	aromatic compound biosynthetic process
GO:0019748	P	secondary metabolic process
GO:0019752	P	carboxylic acid metabolic process
GO:0032787	P	monocarboxylic acid metabolic process
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043436	P	oxoacid metabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044255	P	cellular lipid metabolic process
GO:0044281	P	small molecule metabolic process
GO:0044283	P	small molecule biosynthetic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0044550	P	secondary metabolite biosynthetic process
GO:0046394	P	carboxylic acid biosynthetic process
GO:0071704	P	organic substance metabolic process
GO:0072330	P	monocarboxylic acid biosynthetic process
GO:0080133	F	midchain alkane hydroxylase activity
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901568	P	fatty acid derivative metabolic process
GO:1901570	P	fatty acid derivative biosynthetic process
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15402	CYP86B1; fatty acid omega-hydroxylase	EC:1.14.-.-	Cutin, suberine and wax biosynthesis	ko00073
K15405	MAH1, CYP96A15; midchain alkane hydroxylase	EC:-	Cutin, suberine and wax biosynthesis	ko00073

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network