Gene information

Detail information of g271805

Location

Gene	Chr	Start	End	Strand
g271805	Scaffold_60360:HRSCAF_443446	100353	101060	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010263769.1	1.3e-66	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886.1	1.3e-58	ASYMMETRIC LEAVES 2-like protein 38
trEMBL	A0A835GYP6	7.1e-67	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G02550.1	55.60	2e-63	239	LBD41	LOB domain-containing protein 41

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g271805	AT3G02550.1	232	83	5	1	213	1	231	55.60	2e-63	239
g271805	AT1G67100.1	119	16	0	1	119	1	119	86.55	1e-59	226
g271805	AT1G68510.1	233	94	3	1	209	1	233	49.36	4e-55	211

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	4	102	84.1	6.5e-24

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009739	P	response to gibberellin
GO:0009889	P	regulation of biosynthetic process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network