result

Gene information

Detail information of g27384

Location

Gene	Chr	Start	End	Strand
g27384	Scaffold_16778:HRSCAF_173500	165356	167077	+

Sequences

CDS

Protein

Gene

>g27384.t1
ATGCCAGTACCTCTTGCTCCTTATCCTACACCTCCTGCTCCTGTCATACCCACTAATGGTAGTTTCACAATATCATGTACTTGTATAATGTTACAGTTTTTAATACCCAGGTCCTGGATTGGACTTGTATAAATTCTGAAGAAATGTGATTATTTGCCTCCTAACTCTAAAGTCCAAACTCTTGAGTTATTAGCTAGAGTAATCAAGTTTTTCTTCACTAACTTCTTACTTCATGTGAAGTATTCGTTTCAATACATTCACATTGTACTTCTATGAGAAAATTTCAAACCAGAACCATATAACTCGAATATGCTGTGGTATATATATTGATGATGGTGTTTATGAACAGATCTATCTCTTCGTGAAACTTATTTTTCTGTTTATTCTTCATAATCTATAGGTGCTGGTGCACAAAGCCAACTTGTGTGCTCTGGTTGTAGAAATCTACTTTTGTATCCACAAGGTGCATCATCTGTTTGTTGTGCCGTTTGCAATGTAGTCACATCAGTGCCTCCACCTGGTAAATTCTAAATATACATTTTGGAGTCGGTTGTTTGTTTATTTATTTATTTTTATTTTCTGCACTTATTCAATTAATGCTAACGTAAACTAAAAATAATAATATACATTGGTATTATTGCTATTTTCAGGCATGTGGTAGAAAGTAGTCTATATTTGCAAATAGCTTCAAGCTGATTTAAAATTGAAATGAGTTTTCAAAAGTGTCATATTTTGATAAGTTCTTCTTTTCTTTATGTAGTTCTTACTATGTTTATTTTTTTAAGGTTCAATGAAAGCTCCACAGCTTGAAGTTGCATTTCACTTCATAATATATTAGAGACTGATGTTCCTACTGAATGCTTCTGCAGGCACAGAAATGGCACAGTTGGTTTGTGGAGGCTGCCACACGCTACTGATGTATATACGTGGAGCAACAAGTGTGCAATGCTCGTGCTGTCACACTGTTAATCTCGCTTTAGAAGGTATTAAAACTTTTTTATCAGAAAAATATGTTTGTGTCAACCACACAGCGAATTCTGCATTATAAACTATAGAAGACTAAATTGCCCCATGCTGGGGTTAATGTTGTTATTTACCTATCAGGAACTTATTGGTCATTTCGACACAGATTCAGGTTTACACATTCTTTTAGTGTACTGTGACTGAAAATAAATGCACTAAACTATGGACTTCTTAATAAGAACATAATACATCAATGAATACGGAATGATTTTGGTGTATGTTTTATATTTACAGCAAATCAAGTAGCACACGTGAACTGTGGAAACTGTCATATGTTGCTGAGGTATCAATATGGTGCCAGATCTGTAAAATGTGCAGTTTGCAATTTTGTGACTTCAGTTGGGGTAAAAATTTGGAACTTACAGCTTTTTAGATACATTTTTCCCCGCAATCTCACCAATGCAGGATCAACTGTACTGTCCATATTCACACAAATAATTTACGTAATTTCTTTTATTTTCTTTCTGAACAAGATAATTATACATTATTATCGTGGATAATGAAAAAAGAAATATGGAATTAAACACAAATTCATCTCTTTTCCATTTTAGCTGTGTAAAATGTGCACATTCTTTACAAACTGACACCTTCCCATGCACAAAGAAAAATTGATATTAAAAACATGTTAATAGTCGATCAATAACATGTTTTACCTCTTTGCAGGTTGCTCCAAGCCCGGATCAAAAGCCGAATATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PON65512.1	3.3e-20	Zinc finger, LSD1-type
Swissprot	Q93ZB1.1	8.4e-21	Putative zinc finger LOL1
trEMBL	A0A2P5CWS6	2.4e-20	Zinc finger, LSD1-type

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32540.1	87.80	4e-57	216	LOL1	lsd one like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g27384	AT1G32540.3	139	17	3	8	144	20	153	82.73	3e-57	216
g27384	AT1G32540.2	139	17	3	8	144	20	153	82.73	3e-57	216
g27384	AT1G32540.1	123	14	1	23	144	64	186	87.80	4e-57	216

Ortholog group

Species	Genes
Allium cepa	g257463.t1; g27384.t1; g505636.t1; g520547.t1; g68999.t1
Allium fistulosum	AfisC1G03106; AfisC1G03653; AfisC1G04191; AfisC1G06782; AfisC3G01178; AfisC3G03766; AfisC4G02342; AfisC4G05349; AfisC5G01983; AfisC6G00323; AfisC6G05402
Allium sativum	Asa0G01868.1; Asa0G02071.1; Asa0G02674.1; Asa2G04002.1; Asa3G00397.1; Asa4G00042.1; Asa4G01812.1; Asa4G01819.1; Asa7G01857.1; Asa7G05663.1; Asa8G01788.1
Arabidopsis thaliana	AT1G32540.2; AT1G32540.3; AT4G20380.1; AT4G20380.2; AT4G20380.3; AT4G20380.4; AT4G20380.5; AT4G20380.6; AT4G20380.7; AT4G20380.8
Oryza sativa	LOC_Os03g43840.1; LOC_Os08g06280.1; LOC_Os08g06280.2; LOC_Os08g06280.3; LOC_Os08g06280.4; LOC_Os08g06280.7; LOC_Os08g06280.8; LOC_Os08g06280.9; LOC_Os12g41700.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06943.9	zf-LSD1	Domain	29	53	40.7	1.4e-10
PF06943.9	zf-LSD1	Domain	68	92	47.1	1.3e-12
PF06943.9	zf-LSD1	Domain	106	130	42.1	5e-11

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0002682	P	regulation of immune system process
GO:0002683	P	negative regulation of immune system process
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0008150	P	biological_process
GO:0010363	P	regulation of plant-type hypersensitive response
GO:0010941	P	regulation of cell death
GO:0031347	P	regulation of defense response
GO:0031348	P	negative regulation of defense response
GO:0034051	P	negative regulation of plant-type hypersensitive response
GO:0043067	P	regulation of programmed cell death
GO:0043069	P	negative regulation of programmed cell death
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045088	P	regulation of innate immune response
GO:0045595	P	regulation of cell differentiation
GO:0045824	P	negative regulation of innate immune response
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0050776	P	regulation of immune response
GO:0050777	P	negative regulation of immune response
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0060548	P	negative regulation of cell death
GO:0065007	P	biological regulation
GO:0080134	P	regulation of response to stress
GO:0080135	P	regulation of cellular response to stress

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network