result

Gene information

Detail information of g277207

Location

Gene	Chr	Start	End	Strand
g277207	Scaffold_61116:HRSCAF_444202	206518	212042	-

Sequences

CDS

Protein

Gene

>g277207.t1
ATGTCTTCCGAATCAGCAGCAGCTCCTCCCCCTTCATCTTCAACCATTTCATCAAATTCTTCTATTTTAGCTCATCCATCATCAAAAGTATCATCGAATTCATCTTCACCGCCTAATGAATCTCCACCGTCCAATTTGGTCCAATCTCCCAAAAGTGCTCCCTCTCCTCCTCCTCCACCTCCTTCTCCCCCTCCTCCTTCAAATGATGTTAAGGAAAACAAGCCGAATGACGCTTCTGTCCCTCCACCATCACATGGTAAGCCACCTCCAACTCCTTCAATTCTGTCCCCACCCGATTCGAAGAATTCTGATGAGGGCTTGAGTTCGTACTTGAATTCTAATGATGACCGTGTGACCATTAGCAAGCCTGCAGCTATAGGAATTGCTGGTGGAATTCTTGTGCTTATTGTCATTATAGTGATCTTGTCTTTTGTCGGTAGGAAAAAGAAAAAGAAGAATCCTAATGCTATGCAATATTATATGGATACATCAGTCCGACAAGGTACTGATATTCATGCTCGAAGCTTATAAATTGCCATTTATCCGATTCTCCTTCTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGATGCCTTTTTTGGTTCTAAACTTCGCTATTGTATCAAGAGTCAGGAAATGACTTTTACAATGTAATCTTTGTTCTTACTGATTCGGGACATTAGCATATATCCGGAAACTTCAAGAGATGAGTGGTTTATGCTCTGCGCATTTTTCTTATTAACTCGGTGCTCAATCACTTAGCGATACCTTGGGCTGAACTTGACTATCATATACGTCTAGGCAAATTAAACTTGTGACCTTCCACAACACAGCCATCTTACAACTATTACCTGTGGTATCTAACAACTTTACTCGTAAACATGTGATTTTTATAAGACATTCTTAAGATATCTAAATCCACATTATAAAAATGTACCTTTACCCATGATCAATAGCCAAAAAAGGTGTTTGTTCTGCATAAAACCTTCTAACTCTACAAATTCTGCACTACTCGCTTTTATGTTTTGAACTTAAGTATAACGTGTGTCTAGGGGGCCTAACACATCTTTAATAACACAATCAAACATCATAATATGCCTCTATTTGGTTTTTTGGTTTGTTCATTTACAAAACACGCATCTAACTTGACGTAAAACGCAAAATCACTCCAATTTTCAGGGAAAAATTATTACGGTGGGGGACAACCTACAATATGGGGAAACCAAGACCACATGCATCCGACACAATCAACAGGCACATGGGTCCCACCACCTCTACCGTTGCTAAACAACAACACCACCACCACCACCGATACAAGCACGGGCTTTTCGGGTCCTCACGCCCCTCCCCTGCCTCCTCCGTCTCCCAATGTTGCGTTGGGAAACAAGAGCACTTTCACCTACGAAGAGCTGACCGCTGCAACCAACGGGTTTGCCAAAGCAAACTTATTAGGGCAAGGAGGATTTGGGTTCGTGCATAAAGGAGTGTTGCCCGATGGAACCGAGATTGCAGTGAAGTCGCTCAAGTCGGGAAGTGGGCAAGGGGAAAGAGAGTTTCAAGCCGAGATCGACATCATAAGTCGTGTTCATCATAGACATTTGGTGTCTATAGTCGGGTACTGTATTTCCGGTTCCAAGAGATTGTTGGTATATGATTTTGTGCGGAACAAGACTCTAGAATACCACCTCCATGGTTAGTTATCTCTCTATGTATATATGTATATTGTACACACACATATGTAATAGCTTCCTCTATTTACCACCGTTTGTAGCGTCTTGATACCAGCTATAACTTTATATTTAAATATTTGATCCATATGACAAGAGCGAGAAAGAACAAATATTTAAATAAAAAATGGTTGATATCAAATGGCAACAAAATGGTGTTAAATAGAGAGTTTCAATTCCTCTGTCCTTTTATTACCCGTTCCATGTGCCACAAGAAACCACGGACATTCATCACAATAAAATAGTGAATCAGTAGGGTCCACCATATCATATGAATGGTTGATGATGAAAAATCAATGATTGAGATGTATGTGGTACATGGAGACAGATAGAATGGGGACATGAAATTTGAAAGGGGGGGAGGGGGAGGGGGGGAAGGAGAAAAGGGGGCCGCAATTGATCCTAGCTCGTATATATGTGTGTGGGGTGAACTTTAATAAGTTTGAAGCAAAATTTTTTTTGCTGCATTGACTGTGATTCCACTCCGTTTTTTGTTGTTGTCGTTGTATATTGAAACAAGCAAGTTGGAATATAGGAAAAGGGCTTCCGCCAATGGCCTGGCCTATAAGACTGAAAATTGCATTGGGGTCAGCCAAAGGGCTTGCTTACTTGCATGAAGATTGTAAGCTGCATATCTGTGACATTATGCATTGTAATTATTATGATTTCATTGCCATCATTTTTTGAAATTTCTTATCTGTTTTGAAGGTCACCCACGTATTATTCATCGCGATATTAAAAGTGCCAACATTTTACTGGACACCGACTTTGAAGCTTTGGTAAGGTCATTTATAGCTATCCATGACATATTGTTATGTCTGTAAATGCTTTCAAATGAAGTGTAATATTTTAAGTATGAGATTGGTTCAATTTTAGGATATATGATGAGCTATGCTTGTTATCCGTACTCAGTTTAACTTTAAAATATTGAGATTAAGTGTGATTCCTTACTTCATAACTGAACCAGGTTGCAGATTTTGGACTGGCCAAGTTGTCTGCGGATAACAACACTCATGTATCTACTCGTGTAATGGGGACATTCGGGTCAGTAGCTACATCACATCATGGAAAGAAGGATATATCAATTTGATCTGAATTTTTTATTCAATGAAGAACTATACTTGTAGATAGTTTACAAACAAATATGTACAGGTATCTGGCACCTGAATATGCATCTAGCGGCAAACTAACGGAGAAATCTGACGTCTTCTCTTTCGGTGTGATGCTGCTGGAGATAATAACAGGAAAAAGGCCTTGTGATGCTTCACACACGTTTATGGAAGATAGCTTAGTTGATTGGGTTAGTTTTGTTATGTTTATATATACTCTTGTTTCTTGGTTTTCAGGATGCATTTAACGCAGTCTATCTACTTGTCGTTTTACAATATAAGAATGCAACCTTCACTAAACATATAACGCAGTCTATCTACTAACGTATTAGTAGTGAAGTGGGTTCTGTATATCAGTTCCTATTTTTATATGTAAAGATTACAAGTTTTAGTTGTAAAAGTAGTAATGCTCACAATATACTGTCTGTTTTAAGGTCATTTTTCCTTGATTATGAACAAATTTAGCATTGAACTTCCCAAATGTTTTTGAAGTGGGTTTTTGTGCAAAATATGCATGAAGTGAAGTGATAATAGCTTTTTGTTAGCAAAGGCAATAGTAGTTTTCAAGGCTAAAGGAAAGGTTTAATAGCGTTATGTGGTATATATGTGAAATTAAAGAGCTTGAATTTGTACTGTAAATAAGATCCATTTTGGTTTTGTACATATGAACAGGCAAGGCCAGTTTTATCGCAAGCATTATCAGATGGAAATTACGATGAATTGGCGGATCCAAGACTTGAAGGAAACTACGATCCTATGGAGATGGCACGGATGGTTGCTTGTGCTGCTGCAGCAGTTCGTCACTCTGCAAGGAGACGCCCTAAAATGAGTCAGGTATATGATAAAACTTAAGCAATATCATCCCTTCTAACTTCTAAGAGCATTTAGAATAGGACATAATTTAGTATTAGGCTTGAGAAGGAAACCCATTCCAACACCCAGGTCTTGTTAAAAACATATTACAAAAATAAATCTTTTTTTTGCCAAGTCTGCATTTTGTGCTTCCGCGCTTTGATAGTTGGAATAGATTTTATTTTTATTTATTTTCCTCAAGCCTAATACTATAATTTGTCTTGTACAATGTATACATGTTTTCATAATAGTAGCGATAATTATCTCAAATAGAGCCGCATTTTGTAAAAGAACTGTAAATAACTGAGGTAGGGCTCTTTCCTCACCTGACCATTACCTACATCCATGTAAACTCCAAATAAGGTCAGTGACCAGTTGTAAATTGATACGGTCTTCAGATCCTGAGTTCGACCTTCTTCTTCTTCTTTTTATTTATTTATTTATTTATTTATTTTTTATTTGACCCTGGACCTGAATCCTTTACATACCAATAAGAAGTACAGATTGATTAAGGTAATAGCTATTGGGATTATATGAAATGTAAGAAACCTAAAGCAATTCTAGAAAAGACAGATCACCACTGTAGGGACTTTTTTGTAAAAATGATTCATCTCAAAATTTATGCATAGAGAGTGAGGCAAGATTTTTTATGCTTCAGCTAATAAAGCCATATAAATTCAAAGGTCATGCATCATAAAGACCGAAGTGGTCAGTTGAGCCCCTCATACTGATAAGATTTTGTGTTTTATTAGGCATAGAGGTAACTTCAAAAACAAGCCTCTTCATATAACTTAGTTCAAAAAATTGGCATGCTTGTACACTTATTACAAATACATGTCTTGTTTTGAAGTACCGGAAAAATACACATGCACATTTAAGTAATGCATGCGCATTTTCTGAATTTGTACATATGAAGTAGTAAACACACACCATTCCTTAAACGTCTACTACATCTCAAAATGATTCCTATATTTGGTTTGAACTTTTGAGTTTTGTGTTTCATTGTGTACTTAAAAATGCATGAAATAGTAGGTGGAAAAATCCTAGTTGTTACAACAAAGGAGAGAAGAATTATAGTGAGGGTAATTTAATGTGATTTTGATATTTTCCAAAAGATTGAAAACAAGAAAATGTCATTTTTCAAATTTTTATGTTAAAACCATTTCTCAAATCGATCGTTTTAAGACCTCCATGCAATTCAATTATTACAAAAATCCAAAAGTGAAATTGCAAACTACACAGGGCCTAAGCTATTCAAGGACGTCTATATCACTGTACAACCCCTGTGCTTCACAAATCCACTTTATCTTGAATCAAATTTGGACAACTAGACTCTCCTCATATTATTATCTAATCTCATCCCTTCTCTTAGGCCTATATGAAGTTAACAAAATGATTTATTTATTGCTCACAGTGGATTTTTGTTTTCCAATATCATATAGGAGCCCGGCATTTGCTTTTGCTCCTGTAAATATATTATGTTAACCAATAAATTGCATAATATTGACAAATCCTTCATATTCACAAGCACTAAGAGCGGAAAATATGTGAATTAACAGATAGTACGTGCATTGGATGGAGACGTGTCGCTTGAAGATCTAAACGAAGGAATGAGGCCAGGGCAAAGCATGCTGTTCAGTTCAGGCTCAGATTACGAGTCTGATAGATATACAAGAAGAAACATGAGAAAAATACCAAGTCCAGAATACAGTGGGGAATACACTGGGCCCATAGTCGAGTATGGGCACCATCGTGGCACGAGTTCAAGCAGTGATGGATTATTCTCTGATGAACTGATTCCGATTGGTGATCAGAAACTCCGAGATCAACCTCTCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256256.1	6.1e-177	proline-rich receptor-like protein kinase PERK4 isoform X2
Swissprot	Q9ZNQ8.1	4.2e-146	Proline-rich extensin-like receptor kinase 4
trEMBL	A0A835V402	2.1e-179	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G18470.1	64.13	3e-159	558	AtPERK4;PERK4	roline-rich extensin-like receptor kinase 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g277207	AT2G18470.1	446	147	7	128	565	158	598	64.13	3e-159	558
g277207	AT3G24550.1	387	117	6	223	599	250	635	66.93	8e-153	537
g277207	AT4G34440.1	469	155	10	140	592	206	658	60.13	3e-151	532

Ortholog group

Species	Genes
Allium cepa	g176079.t1; g178142.t1; g263988.t1; g277207.t1; g311529.t1; g538913.t1; g7710.t1; g78171.t1
Allium fistulosum	AfisC2G01349; AfisC2G03622; AfisC5G01902; AfisC5G02319; AfisC6G03005; AfisC6G03843; AfisC6G06325; AfisC7G05902; AfisC8G00891
Allium sativum	Asa1G00263.1; Asa1G04108.1; Asa3G00436.1; Asa4G05761.1; Asa4G05967.1; Asa5G01338.1; Asa5G01339.1; Asa8G01009.1; Asa8G03865.1
Arabidopsis thaliana	AT1G52290.1; AT1G70450.1; AT3G24550.1; AT4G32710.1
Oryza sativa	LOC_Os01g02040.1; LOC_Os01g12720.1; LOC_Os01g53640.1; LOC_Os03g37120.1; LOC_Os03g56470.1; LOC_Os05g01040.1; LOC_Os05g01040.2; LOC_Os05g01040.3; LOC_Os05g12680.1; LOC_Os06g29080.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	256	459	143.1	8.2e-42

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network