result

Gene information

Detail information of g278451

Location

Gene	Chr	Start	End	Strand
g278451	Scaffold_61267:HRSCAF_444353	385520	388793	-

Sequences

CDS

>g278451.t1
ATGTTAAAGGCGATGATACCAAGAAAAAGCGTGAGAATGTGGAGAACAATAAGGAATGCATCGAGAAAAAGAGTTATACCGAGAGTTGTAAAAGTTCAGATATGGAAGCTCAGAGCATCTTCAAACAAAATAGGCTACCACTTAGTGATACTTCGCTTATTTCCGAAAATCTACTTCCAAACTCCAGAGCACAAGATCATCATGATAGTAAAGAGAATGCTACCTGAAGAAGAGTATTCTTGTGCGGAAGTAGAAAACACAACAAATCAAGATGCGAAACCCATAGATTCTAGTGCTGAAATAGAGGACCGAACCTGTATCGACTTGATTGGTGGTATAAATAATCAGCAACAATTGTGTTATGGAATAACAGATTCAAATGCGGTTTCCCATAATGTAAATTACATGAGCAAATCAGATTCTCCACCACATTTGGAACTATCGCTGAAGAGATACAGACATGCCAGTAATAACATGGAGGAAGACAAATCAGATAGTCATGCTCTAAACCACTCCAATTCCTCCCCCTTTTCACTAACACAAGCTCAGACTTTGCATATCGAGACGCTTAAATCTCCTTGGCTTTGTGAACTGCTAGCATTTTACTTCAACTTAAAACGAACCGATCCCCATATCAACACAATGCTTGGTATATTTGCTGATTGCACTCTTAAACCCGATGCTGACAAACCAGTGCTTTCTTGTAGACTCTTTGATTCTGTGAAGCTCGACATAGACCTCACATGCTCTATATGTTTGGTAAGCAACAGGGACATAGTTTTCGATGCTGTATCACTTACATGTGGCCATATATTTTGCTTCTCCTGTTGTACTTCTGCGGCATCTGCCCCCATTGTTTATGGTTTAAAATCAGCTAATCCAAAAGCCAAATGCCCTCTATGTCGTAGGGTGGGAGTATTCAGTGGGGCTGTACCTATGGAGGAGCTAAACATGCTATTGAGCAAAAGTTTGAGAGGAAGTGTCGATGTTGTGGTTTCTTGGCTGAGTTGTGGGTTGCAGTTGAAGGTGTTCTGGTTCGTGACATGGTCGGTGTTGCAGTCGACAATGATGGCAGTGGAGGTGTGGTCTGTTGAAGGAGGCAGAAGTAGTTGA

Protein

Gene

>g278451.t1
ATGTTAAAGGCGATGATACCAAGAAAAAGCGTGAGAATGTGGAGAACAATAAGGAATGCATCGAGAAAAAGAGTTATACCGAGGTTAGTTCTTCCCTTGTACATGGAACTAGCTTTAGTCATAGACATGTTTTCAACATGAATTCAAGAATGCCATGAGTTGATTTTCATTGTTAGATTAAACATGCTCTCTTTGTGATTGTGTAATGTATAAACCTGTCAGCCTTAACAAGCAATGTCTTGAAATTATTTGATCAAAGATCCCTCTTTATAACATATTGTGGTTAATTATTAGTTTTGTTTATGCAAATGAATATTTATGTTTATATTTGCATGGAGCTATATATTGACATTACAAGTTTTGAATTCTTTTGTGTAGAGTTGTAAAAGTTCAGATATGGAAGCTCAGAGCATCTTCAAACAAAATAGGCTACCACTTAGTGATACTTCGCTTATTTCCGAAAATCTACTTCCAAACTCCAGAGCACAAGATCATCATGATAGTAAAGAGAATGGTACTACTTAATCCATATTCCACATTTCTTTTTTGAAATGTAAAACCTTCTCCAAAACTAATACATTAGCCTACCATGAGCAGCAATACCACAGCTACCTGAAGAAGAGTATTCTTGTGCGGAAGTAGAAAACACAACAAATCAAGATGCGAAACCCATAGATTCTAGTGCTGAAATAGAGGACCGAACCTGTATCGACTTGATTGGTGGTATAAATAATCAGCAACAATTGTGTTATGGAATAACAGATTCAAATGCGGTTTCCCATAATGTAAATTACATGAGCAAATCAGATTCTCCACCACATTTGGAACTATCGCTGAAGAGATACAGACATGCCAGTAATAACATGGAGGAAGACAAATCAGATAGTCATGCTCTAAACCACTCCAATTCCTCCCCCTTTTCACTGTAAGTGTATATTGCATTTTTTTAATTTGATGAAATATTATGGTTATTGTACGAAGGCCCCTTTGGCAACAACTTATTTTGAATTCTCCTTAGTAGTTTCTAAGCAGTTTCCAAGTAAAAATGTTTTGATTATATACCATATGTGTACATGCAGTTTGCGATGGAACTTTTTTTCCCTGAGCTGCTCCAGGAAATGTCGGCAGTTTCCAGCTGTTTCAACAAACGAGCACAGAAATTGCTCGAGTTTTAATTTAACTTCCAGTTTTAGGAAATCTTTCTCTTGCTTTAAAGTAAATATGCGTAACGATCATGAAAGCTTGATACAAGAATGAAGAGAACTGGTTGCCTACGCCATAATCAACTCCGTAGCCATGAGGAAAATTTTGAAGAAATATGACATGGTATGCTCCTTTGGCTTGGGCCCTTTATCTTCTACTCTTATAGACTTTCCTGAACTGATTTGAATGTTCTAACCAAAGATTAAAAATCAACTTTAGACATATAGTTCTATCTTCAAATCTAATGATTGGGTTGTGTGTGTTATTGAACTCTAGTTACCAGAGGGGTTAACCATATGCTTTCTTAATTGTAAATTGTAATGACCAACATCTATAAATAATAATAATACAAAAAACATCGTTCAACTTAACCACCATCATGAAGGCTTCAATATCGGTCAATTTTCTGGTGCTATATTGTAATCTGTAGGACTATATTTCCTCCAGATACATGTTCCATTTTTTGTTCATAGTATAGAAAAATATATTTATCTTTCTGGTATGCCTGAATACAGCTTCACTATTCTAAGCAAGGACAGGAATTCAGAACACAAGCTCAGACTTTGCATATCGAGACGCTTAAATCTCCTTGGCTTTGTGAACTGCTAGCATTTTACTTCAACTTAAAACGAACCGATCCCCATATCAACACAATGCTTGGTATATTTGCTGATTGCACTCTTAAACCCGATGCTGACAAACCAGTGCTTTCTTGTAGACTCTTTGATTCTGTGAAGCTCGACATAGACCTCACATGCTCTATATGTTTGGTAAGCAACAGGGTATCATATACTAGTCATATATTGCAAGTGTTCAGTTTACGTTCACAATATATTTTATCATATATTTTGCAGGACATAGTTTTCGATGCTGTATCACTTACATGTGGCCATATATTTTGCTTCTCCTGTTGTACTTCTGCGGCATCTGCCCCCATTGTTTATGGTTTAAAATCAGCTAATCCAAAAGCCAAATGCCCTCTATGTCGTAGGGTACTATCTTCTTATGTTTCAAGGGATTCTAGCTCAAAACATTTGAATTCAGACTTCAAATGCCTTTGCCACTTTACCAGTGAAATAAATGATGATATTCATTTGAAACATTACAGGTGGGAGTATTCAGTGGGGCTGTACCTATGGAGGAGCTAAACATGCTATTGAGCAAAAGGTAACAACCTCTTATCTTAGATGGTTATATATTTGTTAATTATCGGTCTCATAACTGTATGCTCTTCTCTTACTTTTATTTTGTGATAATAGCCGTCCAAATTACTGGGAGGAGAGGCTGCAAGAGAAAGTTTTCTTGCTTCCCTTTGGTATGGCCTTTTGTTAACTTCTTAGTACGATCAAAGAATGTTTTCTTGCTTTAGTTTTCTTAGTTCCTTTGTGTCTCTTTTCAGAGTTGTCTTTAGCATGCACAAGCTCCTTTATTATATTGATCGTTGATAGTAGTTTTTATAACCTGTTCAAGTTCATAGGATATATACATGTATCTCTGCAGTGTATAATTCTTCCTTACCAACCATTTTTAGTCAAACTAAACGAGTATTGAACTTTCGTGTGCCATAATATTGATCGTAACTTTTTTTCCTTGACAGTGGTATTTTAGTTTCAATTATAAAGGTTACTTTGTGTTCTTTTAATGTTTGTACAGTGGAAACTAGTAACACATTAAGTTAATACAGGGTTCTGGAAATTTCCATCCATCTTCAGTCAGCCACAGCGGATCACCTGATTTATCCGATGCGGAAGAAAGCATAGCATTCGAATAAGAAGTTATAAAACTAATGGAATCGAACGTTACCACAACAATGCAGTTTCTTCAAAACAAAGGATTATGCCTCATGCCTACTGCGAGCAAGCAAACAGTGGTATGTTGCTGAAGTCAGTGGTTGGAATGTGATATGGTGGTGCCAAAGTGTGGCAGTTTGAGAGGAAGTGTCGATGTTGTGGTTTCTTGGCTGAGTTGTGGGTTGCAGTTGAAGGTGTTCTGGTTCGTGACATGGTCGGTGTTGCAGTCGACAATGATGGCAGTGGAGGTGTGGTCTGTTGAAGGAGGCAGAAGTAGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268292.1	2.3e-46	probable E3 ubiquitin-protein ligase BAH1-like 2 isoform X1
Swissprot	B8B5U8.1	3.4e-42	RING-type E3 ubiquitin transferase BAH1-like 1
trEMBL	A0A5P1EUS9	1.7e-46	RING-type E3 ubiquitin transferase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02860.1	53.25	4e-40	162	BAH1;NLA	SPX (SYG1/Pho81/XPR1) domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g278451	AT1G02860.1	154	60	2	180	325	154	303	53.25	4e-40	162
g278451	AT1G02860.2	151	59	2	180	322	154	300	52.98	3e-39	159
g278451	AT2G38920.2	151	76	4	172	320	156	298	43.05	2e-24	109

Ortholog group

Species	Genes
Allium cepa	g129981.t1; g170693.t1; g231444.t1; g278451.t1; g287172.t1; g337783.t1; g513524.t1
Allium fistulosum	AfisC2G00785
Allium sativum	Asa6G00127.1
Arabidopsis thaliana	AT2G46670.1; AT2G46790.1; AT2G46790.2
Oryza sativa	LOC_Os09g36220.1; LOC_Os09g36220.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00097.22	zf-C3HC4	Domain	249	301	21.1	0.00019

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0019941	P	modification-dependent protein catabolic process
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0002376	P	immune system process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0003824	F	catalytic activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0016567	P	protein ubiquitination
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006082	P	organic acid metabolic process
GO:0006464	P	cellular protein modification process
GO:0006508	P	proteolysis
GO:0051603	P	proteolysis involved in cellular protein catabolic process
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0008219	P	cell death
GO:0012501	P	programmed cell death
GO:0008150	P	biological_process
GO:0009056	P	catabolic process
GO:0009057	P	macromolecule catabolic process
GO:0009058	P	biosynthetic process
GO:0042493	P	response to drug
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0009626	P	plant-type hypersensitive response
GO:0009627	P	systemic acquired resistance
GO:0009696	P	salicylic acid metabolic process
GO:0009697	P	salicylic acid biosynthetic process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009751	P	response to salicylic acid
GO:0009814	P	defense response, incompatible interaction
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010167	P	response to nitrate
GO:0010337	P	regulation of salicylic acid metabolic process
GO:0010498	P	proteasomal protein catabolic process
GO:0010565	P	regulation of cellular ketone metabolic process
GO:0010817	P	regulation of hormone levels
GO:0014070	P	response to organic cyclic compound
GO:0016053	P	organic acid biosynthetic process
GO:0016740	F	transferase activity
GO:0016999	P	antibiotic metabolic process
GO:0017000	P	antibiotic biosynthetic process
GO:0046677	P	response to antibiotic
GO:0017144	P	drug metabolic process
GO:0018958	P	phenol-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0019538	P	protein metabolic process
GO:0019752	P	carboxylic acid metabolic process
GO:0019787	F	ubiquitin-like protein transferase activity
GO:0033554	P	cellular response to stress
GO:0030163	P	protein catabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0032350	P	regulation of hormone metabolic process
GO:0032446	P	protein modification by small protein conjugation
GO:0032787	P	monocarboxylic acid metabolic process
GO:0034050	P	host programmed cell death induced by symbiont
GO:0036211	P	protein modification process
GO:0042221	P	response to chemical
GO:0042445	P	hormone metabolic process
GO:0042446	P	hormone biosynthetic process
GO:0042537	P	benzene-containing compound metabolic process
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043436	P	oxoacid metabolic process
GO:0043632	P	modification-dependent macromolecule catabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044248	P	cellular catabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044257	P	cellular protein catabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044265	P	cellular macromolecule catabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044281	P	small molecule metabolic process
GO:0044283	P	small molecule biosynthetic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0046189	P	phenol-containing compound biosynthetic process
GO:0046394	P	carboxylic acid biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0061630	F	ubiquitin protein ligase activity
GO:0061659	F	ubiquitin-like protein ligase activity
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0070647	P	protein modification by small protein conjugation or removal
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0072330	P	monocarboxylic acid biosynthetic process
GO:0080021	P	response to benzoic acid
GO:0098542	P	defense response to other organism
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1901565	P	organonitrogen compound catabolic process
GO:1901575	P	organic substance catabolic process
GO:1901576	P	organic substance biosynthetic process
GO:1901615	P	organic hydroxy compound metabolic process
GO:1901617	P	organic hydroxy compound biosynthetic process
GO:1901698	P	response to nitrogen compound
GO:1901700	P	response to oxygen-containing compound
GO:0062012
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16275	BAH, NLA; E3 ubiquitin-protein ligase BAH	EC:2.3.2.27	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network