result

Gene information

Detail information of g287172

Location

Gene	Chr	Start	End	Strand
g287172	Scaffold_62411:HRSCAF_445497	58730	62031	+

Sequences

CDS

Protein

Gene

>g287172.t1
ATGCCGAAAAAAGAAAAGTCCCACTTGGGACAAGTCATCTCAATGCCAATGTGGTTTGATGGGCAAAGTCTCGAACGAACCTTGAAAACATGGAAATATGAGCTAATGTTAAAGAAGGATATGAAGTTACATGAGGAAAATGTGATCGGTACCGATAAGATTTTAGTTATGGGATGATTCGTTCTTCATTGCTTCTTTATTAGATCTGGAATCTTTCATGGTATTCTGCGATCTAGCGACTCTACTGGGCGATTCTGCTATAAATAGAAGCATTATGGCCATGGGAAAGAGACTTTTAGACTCTCTTTGGCCTCCATGTTCTTCATCTTGTATTCTCTTCACAACACTTGCCACTGTAAGCCTATTTTCATTGTTCTAATTCTAAGAATGCCCTCGTATTTGTGACAAATACAACTCTAATAAGATTAAAGTGGATGTAGGCCATAAAATTTTCCGAACCACTATAAAATTCATTATGTTCTTTACTATTTTTACCGATATCATTAGAATTTTTTTTTTCATTCGATTAGGGGTGTTGTGCCAATTTTTTGTTCAACATTTTTAGTGTTTTCACTGAGACTAGAACTACTCAGGAGTAGACCTAGCTTATTACTATATATTAGAGCGTCTAGAATTTAGATCTTGAAGATTGTTGTTGTAGATCCGTAGTGAATTGATTTCTGAGATAATGACCCATAGGTGAAACGAATGATCTGGAGCTATAATCGGTGGAAAAGATGAAGCTTCCCGCCATAATAAAGAGACTAACCAACTGAGAATTGCTTTGCCAAGACCATCTATCCCGTAGAAGATTATGTAAAGGGTTGAATTTGGCTAGATAATGATTGAATTAAATCAGAGGATGGTGGACAGCTATAAAGCACTTCTTGATAAGTTGGATGCAAGTATTTCCCTATTGACCAAGTAATCACAAATTATAGGAAATGTCGGAGAGATGCGTCATCTTCAAGTTTTGTAGAAGAGAATTCATCTTTATCTAATCAAAGCAGAAGGGATGAGAAACAGAAAATGAAGGAAAAGATTGCTAGAGCATCAAGGAAGACCATATGAGGAAGCGGATAAGTTTTGGGTGACACCCTATATTTGAAGTGCCATAATATGGGGAAAATTAACTAAATATATGATTAATCAAATTAATTTATGAAGTGGAGAATAAAGACATGAATTTAAAAAGAAGAGTTAGAGGAATTAATAAGAATAGACTAATATGTGATTTTATCCCAAAGCCCAAATTACTAACCCCTCTAGCTACTCCACTTTCATTCATTCTCTCATTTTCTACAAAACCAAACAAAAAGAAACCAAGAGGTAAAGTAGGCTGAACATTCAAGAGGAAGGAAATGGATAACTAAGATAAAACAATGAGCTTTCATCATTAAAAAGACTTTTAATCAAGTTTAATCAAACCAAAGGTAAATAAAAATTTCCCTAAAACCCCTCCTAACTTGTTTGGGTTTGAATTTGATTTTGAATGATTGTTTTTAATAATGATAAACATGTTGGTAATGACTAAACATTGATTGGTATGTTTGAAAGTTTATACAAAGTAAATTTATTCATGTTTTAGGGCAAAACATGATCATGATAAAATGATTCGAAATTGAAGTATGTTATTTACAAAGACAAAATAATGATTGATTTTTAATTTCATAATTTTCACTAGTACAAAAAGTGCATATTGCTTCGTCTCATTTGCATCGGTTGAAGTAAAAACTGATGCAAATAGAACTATTTGCATCAGTTCTATCTTAATAACCGATGCAATTAGTACGTGGAAAGCAATAGGTAATAAAAAATCAAATTTGCATCAGTTGTAACCAACAACCGATGCAAATACGTCATGCAAATAGTTTTAGTCGCATCAGTTCTAAAGTCAACCGATGCAACACATGTTGGTGGCAAAGATATGAAATTTAGGTGGGAAATAATGAAAAATTGGGCTCCAAAGTTGCTAATTTTTGATGACAAATGTACTCCTTAACCCACTCCCCAAAAAAAAAAGATAATTACGTTGGCCAACAGCAATAACGAATCTTTCGAAATTGAAGAATCAGTGGCGAAGTTGTCCAAAACAATCGCTGACCTAATCGAAGAAGGCGTTGATACTGACAAGGGCATCCCAATTCCGGTTGTGCATAGTGCTGCTTTGGCGAGAGTAATCGAACTCTGCAATAAACACACGGAAGAGGCAAATAAGAAGAAGGAAAAGGCTGCTGAGAACGATGCTTTCGCTGATTGGGAGAAGGAATTCCTGGGTACTGATTTTGATGACCTCGGTGCAATTCTTACGGTAAGTTTTGCTTCTGAATTCTTTTTGCTGATGTTATCAATTTTTTGCTTTGAAATGTTTCTTTGCTTTTGCTGATAATCAAGATCTTTGTTTTTTACTTTTGTAATTTATTGACCAAATCAAATCAAGAAAGAACATTAAGATTCAATTAATTGAAGGCTTCGATGCTGCTACCAATTCGATGTTTTGGAGTGATCAACAATCGATTGAGAATCTCCTTTCCCACCATCTTCCATTCAACAGTAACTACAGACATCCTCGAAGAGAGAAATAATTATGCTAACCCGACAATGGTGGAGCTGTTATCTCCTTGTAATTGACGCTCGACCAAACTTCAGCTTAGAATCTTTGCTACCGATCTATCCCCAAGTGTTATTAGGTGGTTCGTACCCAAACTCCATGAAGATATGTATTGCTCCCCTAAAATCTTATATTTTAATACTTGTGTTTTGCAGCAATTGTTTACAGTTTGTTTTTATCAGTTCCTCTCTAATGTAGTCTGGAGTTTCAATCCATTAAAAGTTTCGCATATTGTGCTAAATCCATTTATGCCATACTCTTTTAATTTTGCAGTGATTTCCTACAATGATTCTGTGAACATGGTTTACAAATGCATGTTAAAAGGAGCAGCTGATTTCCTTGTCAAACCTGTTCGAAAAAACGATTTGAGGAAGTTGTGGCAACATGTTTGGAGAAGACGCAAGGTATGCAAAATTGTTCCTTGTATCTTTGCAGAATTTGTAGATGTATCTTTCATTTGATAACTTGACCAGTTATATAACTATGTATGTTGTATTGTGTCCAGTTAAGTGATGTCCAGGAGGCGATAAAAAATGTTAAAGGCGATAATACCAAGAAAAAGCTTGAGAATGTGGAGAACAATAAGGAATGCATCGAGAAAAAGAGTTATACCGAGGTTAGTTCTTCCCTTGTACATGGAACTAGCTTTAGTCATAGACATGTCTTCAACATGAATTCAACAGTGCCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_027352942.1	5.9e-14	two-component response regulator-like APRR9 isoform X7
Swissprot	Q689G6.1	1.2e-14	Pseudo-response regulator 95
trEMBL	A0A8B8LDV1	4.2e-14	two-component response regulator-like APRR9 isoform X7

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G24470.1	74.42	3e-15	78.2	APRR5;PRR5	pseudo-response regulator 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g287172	AT5G24470.1	43	11	81	123	239	281	74.42	3e-15	78.2
g287172	AT2G46790.1	47	17	81	127	117	163	63.83	3e-14	75.1
g287172	AT2G46790.2	46	16	82	127	1	46	65.22	4e-14	74.3

Ortholog group

Species	Genes
Allium cepa	g129981.t1; g170693.t1; g231444.t1; g278451.t1; g287172.t1; g337783.t1; g513524.t1
Allium fistulosum	AfisC2G00785
Allium sativum	Asa6G00127.1
Arabidopsis thaliana	AT2G46670.1; AT2G46790.1; AT2G46790.2
Oryza sativa	LOC_Os09g36220.1; LOC_Os09g36220.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0008150	P	biological_process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048579	P	negative regulation of long-day photoperiodism, flowering
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0051093	P	negative regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0065007	P	biological regulation
GO:2000026	P	regulation of multicellular organismal development
GO:2000028	P	regulation of photoperiodism, flowering
GO:2000241	P	regulation of reproductive process
GO:2000242	P	negative regulation of reproductive process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12129	PRR7; pseudo-response regulator 7	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network