result

Gene information

Detail information of g288285

Location

Gene	Chr	Start	End	Strand
g288285	Scaffold_62570:HRSCAF_445656	318044	320385	+

Sequences

CDS

Protein

Gene

>g288285.t1
ATGACGCCAATATACTTGTTGAATGTCTATATTTTTATATTGCTTTTGTTTCTTTACACCGTGCCTGATAAGGATGATTACCCTTGCTTTTTTCTTTTGATAAGTATCTCTAGGAGGATACAAGGCAACATTGCTATTCACATCTTTGATTGCAGGGAACTTATCAGGTAGCCAAGTGGAACGGAACCAAGGTTTCTGTTAAAGTACTGGACAAAGATAGCTACTCAGATCCAGATAGCATGTAAATTCTTACCCTACTATTTCCATGAGTGTATTTCTTTTATCTAATTTTTGTTCTTTTTTGTTTGCAATGTATTTGTGTAATAACACCAAATGGATTCACATATTCTTTTATATTTCAGCCTTCTATGTTTCATATTCCTACATGATTCTGCTTTTTTCATGTATAAATCTTAAATTTTGGACGTCTATCAATAAAATATTCACACCCGTTCGTCTTTTTTGTTTCCTTTCCAATGCTTATCGTCCATTTTATGGCTCTTTTGTACAGACAAGCTTTTAAACAAGAGTTAACAATGCTGCAGAAGGTTCGGCATCCAAATGTAGTGCAGTTTGTAGGAGCTGTAACTCAAAATATACCAATGATGATTATTTCAGAGTATCATCCAAAAGTAAGAGCTAATCTCTGTTTCAGCAAAAATTTGAATAAAAAATCATCAATATTGTCTCGGTTCAACCATAAATCTCCTTTTCTTTTGAATCTATCAATGTTAAGCTTATTTATGTTAATACCAGTATATCTGCATGTGTTATGGATGTTCATTTTATTTTTTTAATGGTGTTAATCTTTGAGTTTACATGGACTATTGAATTCACCATTACACACGACATGTGTGAACATATTGTTTATTCTAAGTGTCTATGTCATATAAAATGCATTCAATATGAATGGATTTACACATGCGGTGCTTGGTAGCGCACGTGAAATCCACGTGATGTTGCACATGCTGATATAATATTCAAGTATGAGGAAGATGATGTATAATATTCTATCAGGCCCTATCAAATATCCTCAAATCATTGAGTTCACAAAGATTAATTGGTTCATTAGAAGAAAAAGTAGAACAGTGATACACAAATACCAGAGGTTTTATATTATTAGCAATTTGACTTTTATTGGATATTTATGTATATGTACTCGTATCGATTCGTAAATATTGTCACTGTAGTATTTTATTTCAATGAATCTACATGATTTTTGATAGCTTATAAAGTTTCAGTAAATCAGTGTAGTGCAAATCTTGGAAGACTAAAAACTCACATAGCAATCATAAATACATCTGTCCATTTTCCTTCTCTTTCTTCCCTCACCTTTCTCCTCTTTCCTCCTCTTAACTCCTATTTTATACATACTTATATATTTGTAGAATGGTAGTTTCGTTATTTTATCTTGACATGGTTGAAAATAGAAGGTTTTGGTTACTAGTATTAACATGATCCCTTTTGTTCCTTGACATTTGATATACTACCAATGAATTATGGAGACATCATATCTAATTGATTTTATAACATAGGATTTATTTTGTTTATGTTGATAATCAGGGTGACTTGAAAAGCTACCTTCAGAAAAAAGGTCATTTACATACGCACAAGGCACTTAGGTTTGCCCGCCACATTGCCAGGTATGTGCTTTAAGCATGAGCTGTAACTGCAGTATTAAGGTTTTGCAGATTTAATCTGTTGAATGAAATTGCATTAACAATTTTGTGTAACAGTGTCATGTGTGTTATATGCTTTTCTATTTAGTGTTTCAAACTTAGGAAGATGCATTGAAGCAATTTATGTACGAATGATCATTAAACAAATGTGCCCCTTCTGTAATTTGCATGCGCCTATGTACATACATTTGTTTAAACGTCCCGATTTCTTTGATATTTCATTTTATTATTTGAAAACAGATAGCTTTTGCTACTTTTTACTACCGTAAAAATCGTATAGAATATTTCTGTTCTTACATGTGTACATTTTTTTCTTCTGATATTTAAATGTTGACAAGACCCGGAATTTCATACCTCTCAAGAAGTCAAATATCAGATATGTGAAATAAAAATGAAAAAATGCTTATGCTTTTTAACCTGGATCCTTTTTTGTTCTAAAAGTATATGTTTTCTTCACAGGGGAATGAACTATCTTCATGAGTGCAAACCTGACCCAATCATCCATTGTGATTTACAGCCAAAGTAAGATGAGCAAGTGACTGAAACCAATTTAGTCTATACACTATATATATGCCAACACTTTCACATAATTGCATCCATTAGTTTTGCTGTACTTTACTGTTTGGTCTTTTGGTAAGGTGCCAGAAATATTTTGCTGGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	KRH43028.1	2.2e-55	hypothetical protein GLYMA_08G126000
Swissprot	F4IS56.1	8.4e-52	Ankyrin protein kinase 1
trEMBL	A0A5B6ZGB8	5.5e-56	Putative Integrin-linked protein kinase family isoform 5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G43850.1	80.34	1e-54	207		Integrin-linked protein kinase family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g288285	AT2G43850.1	117	23	9	125	207	323	80.34	1e-54	207
g288285	AT2G43850.2	117	24	9	125	207	323	79.49	4e-54	206
g288285	AT2G31800.1	117	24	9	125	204	320	79.49	2e-53	204

Ortholog group

Species	Genes
Allium cepa	g135396.t1; g288285.t1
Allium fistulosum	AfisC2G01652; AfisC8G03216
Allium sativum	Asa1G02081.1; Asa5G01182.1
Arabidopsis thaliana	AT2G43850.1; AT2G43850.2; AT3G59830.1
Oryza sativa	LOC_Os01g66860.2; LOC_Os01g66860.3; LOC_Os01g66860.4; LOC_Os02g39560.1; LOC_Os02g39560.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	9	123	88.8	3.1e-25

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0002376	P	immune system process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004712	F	protein serine/threonine/tyrosine kinase activity
GO:0007165	P	signal transduction
GO:0005783	C	endoplasmic reticulum
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0006970	P	response to osmotic stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009628	P	response to abiotic stimulus
GO:0009898	C	cytoplasmic side of plasma membrane
GO:0009987	P	cellular process
GO:0012505	C	endomembrane system
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044425	C	membrane part
GO:0044444	C	cytoplasmic part
GO:0044459	C	plasma membrane part
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0046777	P	protein autophosphorylation
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0098552	C	side of membrane
GO:0098562	C	cytoplasmic side of membrane
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network