result

Gene information

Detail information of g29000

Location

Gene	Chr	Start	End	Strand
g29000	CHR1	271093806	271096749	+

Sequences

CDS

>g29000.t1
ATGGCAGCCATTGTAAGGAGGAAGAAGGTTGAAAATCTTAGTCGCAGAATTTCCCTAGTGATCAGAGTAGCCAGCCTCTATTCTGCTGAAGATAGGATGATTCTCTCCAGATTGCAATATGTTCATATTATAAGTAGCTTTTTGAAGAACAAAAGGTACTTCATCAAAAACAACATGATGCAGGCTCAAAGCAATGGACCGCTGTCAGTTCCTCCAGGCTTCCGATTTCATCCAACGGATGAAGAACTGCTTTACTACTACCTAAGGAAGAAAGTGGCTTACGAAGCCATTGATCTCGATGTCATTAGAGACATTGATTTGAACAAACTCGAGCCATGGGATCTCAAAGAAAAGTGTAGAATAGGAACAGGCCCTCAGAATGAATGGTATTTTTTTAGCCATAAGGACAAGAAATATCCAACAGGGACTCGAACAAATAGAGCAACTATAGCAGGATTCTGGAAAGCCACAGGCAGAGACAAGACTATTCATCTGAGTAATGCAAAGAGGATAGGAATGAGGAAAACACTAGTTTTTTATACTGGAAGAGCTCCACACGGCCAGAAGACCGACTGGATCATGCATGAGTACCGTCTTGATGAAGCCTGTTCTGATGTTCAGGAAGATGGATGGGTGGTGTGTAGGGTATTCAAAAAGAAGAATCTACAAAGAGGAATGATGCCGCCTGAATCATTAATAATCCAAGATCAAGAAGATCGATTCAACCACTTTCGGGCATCTGCAGGTGGATCCAACTCATTTATCGAACACAAACACAGCAACTACCAAATGAACGGTCCATGCGACTTCACCTTCGATAACTCAATGCAACTTCCACAACTATTCAGTGCTGAATCTTCCAACAACACTAATTTCTTGCCTCCTTTGATGAACCCTAGTACTGTATCTTTAAGTTCACTAGACCTGGAATGCTCCCAAAACCTTTTGAAACTCACTGGAGGTGATTTGTCCATTTTGGATAAGTTATTGCAGGCATCGCAACAAAACACGGATCAAATGTTTCATAATAATATCAAGAGTGATACAACCAACACTACCGCTGCTGCTGCTCTAACTACTAATGCAAACCAGGGATTTCCATTTCAGTATCTTGGTGGTGATGCTAATGACCTTTTCAAGTTTCCAAAGTAA

Protein

Gene

>g29000.t1
ATGGCAGCCATTGTAAGGAGGAAGAAGGTTGAAAATCTTAGTCGCAGAATTTCCCTAGTGATCAGAGTAGCCAGCCTCTATTCTGCTGAAGATAGGATGGTATTTATAGGATTTAGATTGCGCTTGGATCTAGGGCTGTCAATGGATACCTGAAAGTCTGAAATCCATCCGCATCCGAAAAGTAGATAAATATCAGATATTTGAAAAAACGGATGTAGATATGGATACAAAGACATCCGCATCCGAAAATTTTCCATCCAGTTTATGTCAAGATTATAGTTCAAATTATGTATATTTTAATGCAAAAAATGATATTCGTTTATTATTTTATTAAGTAAGTATTTTATATTATATCAATTTATTATCATCATATTTGTTAATTTTTAACATTTTTATAATCAATGAGATTGAAAAATATTTATATTAAGCTAAAATTTTCGTTTTGTAATTCTTGATTTATTAGTTGTGAGCGGATAGGATAATTATTCGATATCCGTCCGTATCCACGGATGTAGATATCCGATATCCAAAAATGATTTCGGATGCGGATGCGGATATGGTACTATCGGCATCCGAAAGCATCCATTAACAGACCTAACTGGATCGTAACTAGAGTACCAGAAGCTTATATAGTTATTCATAGGAGAAGGCACGTAAAGTTTGAGGTGATTTTGAACTAACTTTTTAGATCGGTACCAATCCAGCTGGATCGGATCGGTACCAATCCAAATTATTGTTCAATTTTTGCACAACTCCTACTTCGTTGGTTTTCTTTCTTGCATGTGAGGTTCCCCATATGATTTCAAACTGTTGACTTTTTTTACGATGGTTCACCTATAAATTAGATTGAACTGTAATTTGCATCGCGTAAGTATTGACTTCTTCAACTCGGATGCTCGGAATATTATCAAACTTGAAAGATAAGTTTAGTAGAGATATAGGAACATAATCCTTGTGGATTGGAGAATCCACAAGTCCATAATTTGGATCGGTGTCGATCCAATTGGATCGGATCGGTGCCGATCAGAATACTTGGCGTATTTTTGGTTCAAACTCCCGGGGTTTCTTTATCATGTACTTTTAGGTCTTTCAGTCAAGTTTCGAGTCGTTCTGGCTCAGTTTGAATGTTCTAAATTCTACCGGGTTAAAAAACAAGTTAACAGGATCAAACATTAACATCACTTAGAGACTAGTTGAGCAATTTAAATATTATGACGGAACTTTTGTTTTTTTTTTCCGTTAAATTTGAAATTCAAAATTCTTATTGACGAGTAATTGAAAGACTATTGCATGAATTTAGAAGGTTTTTGACATATAACGAAGAGTAAGATATTTGTGGTAAGGAGTTGTTTTATGGACTTTAATAGTTAAAAGAAACTCTACCATTAGAAGCAACCACATCAACTGTTGTTCTTAATTTTTTAAGGTCTTATTGAGATGTAACCGGATTTCTCAATGTTTAGGTTGTTTGTCGAATTTTATCGACTATCCCTGTTATGGTTACTTCGATGGAAAGAAGCATTTCAAAATTTAAATTGGTTACATACACTCGAACAACTATATCGCAAGAGAGATTAAGCGGACTAGCTTTGATTTCAATTGAAAACGAGTACTTGGATATGCTTAATTATGAAGAGATAATAATCGATTTTGCTTCTAAAAATGAAAAACGAAGTTGTTTCCGTTGATATCTATTGATATTGGCATATCAAATTGACTTCCAAATTTTTTGATATGTAATCTAAATGATTTAGTTGACCTATATTTATAATCAATGATAAATTTTATGATAGAATTTGCATGTTATTTTACACGTATAAATATATTATTATTTGTTTAATAATAGGGCAACAAAAACGATTTTTATTAGACTAGGGCATCAGAAATGTTTGGGTCGCCCTTGGTGGTTATGTTAGACCTCTTTCTAGATTGAGTTCCCCCCTCTCGTGAGTTGTTTCTTTCTTTTTGCTACTGTGTTGTATCCTTTTTATGTTCGGCAATGTTTACTGTGATGTAAACGTGATTCTCTTGTTCTACGTGAACTGCATCGTGTGAGTTATAGTGTTATAGTAGTTGAGACTCATCCATCACACTATTTTACTCATGTTTCATAAAATATGATAGAACACCATCCAATTTCGCCTACTTCGTCAAAAATTCATTTTTTTTCAAAAATAATTTCTTGAAATAAATTTGTTAATATATCATGCATATAAATTGGCACACACTTTGTTGTAATAAAAAATCCCTAATGTTACGTGTCTACCAACTTATATTAATTTATACACCACTTCTTCAAGTTATTTATCGATGTGGGATTATTCCAATTTCAAATCGCCATTCCTCCTTAACACATGAGAGAAACCCCTAATAATAGTTTAAGAAACTAATTTTTTTTCTTCCAAAATTAAGGTTTCTTGAATTCAAAATCTTATTTTATTCAGCCTCGTACTTTCGTATTAAAATGTATAAAACTATAGTAGACTTTCAAATATATTTGCTTTCCAATTTTTGAACGCAATCAGTTCTTATAAAATTTTCTACCAAAAATATATCCTTCCTTCTTAAATATTTTGTAGATAATCACTCTATCAGTTGACTAACCTCCTAAAGTCTAATGAAGTTGTTTTGACAAAGTAGAAATGAAAACGTATAACGTGACAATTTATTTTCTATATCAGATTGTCTTTCCCATGATTATTATACACTATCCTATCATTTTGAGTTTGCTCGCTAGTAATTAACAACTTCTTTTAGCGAAAATTATAAGTACCACCCCCATAGACTTCCGTGAAGAAAAAAGAAAGAACACACATAAATGAGATTCCACTCCATGCAATTTAGTGCTAATTTAGTACTAACCATTAATAACAACTGGTAAAAGAAAAGAAAAGGGGAAAAAAAAAAAAAACTATAACTCATAGAAGTCAGCTCAAGACACATGAAGCAAATAAAATAATGCAAGAGGGGGCAAGAATAGAAGAGGAATAGAGAATAGAAATGGAATATTTGGAATGAGGAGGTGTAATTCTTCATTAGTTGATTGAGAGAGCTTAATAAAATAGATTCTCTCCAGATTGCAATATGTTCATATTATAAGTAGCTTTTTGAAGGTAAGGACATCCATTTACTACTTATGAGGAGATATTAAGGCAGGTCTCCTGTTCAAGAGACAACTTCCTATTTTTACTTAATAATTCCAAAACCCATGCATCCTCATTTCTAAACCTATATTCGTATTTCTACCGTAGTAAATATTTTTATAAATAAAATACCATCCTTTTTTAGTTATTTTTTTATTTTATTTTTCTTTGAATGAAGACCTTAATTAGCCCTAGCTAGATAGATATCTCTATACATAAGCTTCTTCTTCTTTGTTCATTAAGCTGTACTCATTTTCGTAGCTATTTGGCTTTCTTTTGCTTGTCCTTTGCTCTGTATCCCTTTTATTTTGTGTGTTCTTTAAGATTGAAAGGTATGTTTGTTAACTTTTTCTTTGTGGCTTTATACTGTTTTTGGTATTTGTTTTTTTCTTTAATTTGATTTTTTTTGCCTTTATATGCTCATGTGAATTAATTAAGAACCTCTTATACTTAAGTAAATAATCACTTGGATTTGAAGTTATGTAATTTAATCTTCTATGTAGTATAAACTCAATAAAATTCGTTATTGAAGAGAAAAATCCTTGAAAAATCTATCTTTGATATTTTTGTGCTTATTTTGAAATTGAACAACTACAGAAAATAAAAATATTTATGCGTTGTATTTTCAGTTGTAACATATAAATTGAGCATGTATATTTTACACTTGTAACAATTTGTAAAACATCACGAAATCTTTTTTTTTCCCTGGAGCTGTCTATTCTGGATCTCATGTCTCGTTTTCATTTTTATTTCTCAGTTTTCAAGACATACATGAGTAAACTTACTATTTTTGTTTGATAAATCAACTAATTCTGATCTCTTCTCAGAACAAAAGGTACTTCATCAAAAACAACATGATGCAGGCTCAAAGCAATGGACCGCTGTCAGTTCCTCCAGGCTTCCGATTTCATCCAACGGATGAAGAACTGCTTTACTACTACCTAAGGAAGAAAGTGGCTTACGAAGCCATTGATCTCGATGTCATTAGAGACATTGATTTGAACAAACTCGAGCCATGGGATCTCAAAGGTAACTTAGAAAATGTTGCCCTAATATACATCCATATATTTCGTTTTCTTTTTCTGTAAGAAAAAAAAAAAAAAAAACTGTAACAATACATATATTGCATGCAGAAAAGTGTAGAATAGGAACAGGCCCTCAGAATGAATGGTATTTTTTTAGCCATAAGGACAAGAAATATCCAACAGGGACTCGAACAAATAGAGCAACTATAGCAGGATTCTGGAAAGCCACAGGCAGAGACAAGACTATTCATCTGAGTAATGCAAAGAGGATAGGAATGAGGAAAACACTAGTTTTTTATACTGGAAGAGCTCCACACGGCCAGAAGACCGACTGGATCATGCATGAGTACCGTCTTGATGAAGCCTGTTCTGATGTTCAGGTACTAATTTATTTATACTACTAGTTTTAAGTTATTTTAAACTGTTGTTTGGTTTTCATAAACATATTATTATTACATTTAGTGAAGTTTTTTGTACTAGGTTAATTAATTATTCTTACCCCTTTCTGTTTGATCAGTCTCCCTTTCTGATGTTTCTAAAGCAACGGAACTGATGTTATGTTCACGTTTACATAATAGTTTTTCCACTGCACTGGAAAAAAATTGGAAAACGTTTGCTGTTCCAGTAGTTTTTCTTTATGCTTCATGTATAAGGAGCATCAACTAGTAGGAATTATGTTCTTGTAACAAAATGTTATGGATTCTAATCCTTCAGGCTTCAAGCATATACAATAGTAAAGTGCTCTTTCTTTCTTTCTTTCGCGTTCTTTTTTGCTTTTCCTTTTCCATATCCAAAACATTAAAAAAAAAAAAAAAAAGGGTAAAGGAGGAAACCGCATATATGTTGTTATATATTGGATCACTGGGTATAGCCAGTGTCAAACAGATTTGTAATTGGAATATCTTCATTCACATACATAAGCGTTCGCGGTTTTAATTACTGGTAATCTTCAACATATGTAATTATTGTTATGTTTATAGAATTATAACATGGTACATTAAAAATTGCAGGAAGATGGATGGGTGGTGTGTAGGGTATTCAAAAAGAAGAATCTACAAAGAGGAATGATGCCGCCTGAATCATTAATAATCCAAGATCAAGAAGATCGATTCAACCACTTTCGGGCATCTGCAGGTGGATCCAACTCATTTATCGAACACAAACACAGCAACTACCAAATGAACGGTCCATGCGACTTCACCTTCGATAACTCAATGCAACTTCCACAACTATTCAGTGCTGAATCTTCCAACAACACTAATTTCTTGCCTCCTTTGATGAACCCTAGTACTGTATCTTTAAGTTCACTAGACCTGGAATGCTCCCAAAACCTTTTGAAACTCACTGGAGGTGATTTGTCCATTTTGGATAAGTTATTGCAGGCATCGCAACAAAACACGGATCAAATGTTTCATAATAATATCAAGAGTGATACAACCAACACTACCGCTGCTGCTGCTCTAACTACTAATGCAAACCAGGGATTTCCATTTCAGTATCTTGGTGGTGATGCTAATGACCTTTTCAAGTTTCCAAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268068.1	6.5e-124	NAC domain-containing protein 76-like
Swissprot	Q9MA17.1	6.1e-87	NAC domain-containing protein 33
trEMBL	A0A5P1FRZ8	4.6e-124	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G79580.1	53.74	3e-95	345	ANAC033;SMB;URP7	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g29000	AT1G79580.3	361	122	7	66	383	13	371	53.74	3e-95	345
g29000	AT1G79580.2	361	122	7	66	383	13	371	53.74	3e-95	345
g29000	AT1G79580.1	361	122	7	66	383	13	371	53.74	3e-95	345

Ortholog group

Species	Genes
Allium cepa	g15570.t1; g29000.t1; g528738.t1
Allium fistulosum	AfisC1G01385; AfisC2G05781; AfisC2G07753
Allium sativum	Asa0G01256.1; Asa0G01257.1; Asa0G04548.1; Asa0G05434.1; Asa0G05880.1; Asa0G05881.1; Asa5G03039.1; Asa5G03291.1; Asa6G01300.1; Asa6G01318.1; Asa6G01329.1; Asa7G01340.1; Asa7G04707.1; Asa7G04708.1
Arabidopsis thaliana	AT1G32770.1; AT1G33280.1; AT1G79580.1; AT1G79580.2; AT1G79580.3; AT2G46770.1; AT3G61910.1; AT4G10350.1
Oryza sativa	LOC_Os02g15340.1; LOC_Os06g04090.1; LOC_Os06g33940.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	71	199	96.6	1.1e-27

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009832	P	plant-type cell wall biogenesis
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010453	P	regulation of cell fate commitment
GO:0010455	P	positive regulation of cell fate commitment
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042546	P	cell wall biogenesis
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044085	P	cellular component biogenesis
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045595	P	regulation of cell differentiation
GO:0045597	P	positive regulation of cell differentiation
GO:0048364	P	root development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048731	P	system development
GO:0048829	P	root cap development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051094	P	positive regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071554	P	cell wall organization or biogenesis
GO:0071669	P	plant-type cell wall organization or biogenesis
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network