result

Gene information

Detail information of g290097

Location

Gene	Chr	Start	End	Strand
g290097	Scaffold_62829:HRSCAF_445915	142236	143949	+

Sequences

CDS

Protein

Gene

>g290097.t1
ATGAACAGTGAACATCAAGGGCAGTTAAACAGTTATGGTTTCAACGTAACCGGAGATGATGGTTGGGCTCAGTTCATTCAACAAGATCCACTACTTTCTTGTTTACAGTCACCAAAGAGGCCGCCAGTCGATAATGATCGTAAAGATGATAGTGATCAAATATTATTAAAGTGTAGTTCTTCGCTTAACAACGCTCCATGCATTATTTCATTTGGTGATCCAGCCTCTCCAGCTGAACTACATGCTGTTCCTGCCATCAAAAGAGAGTCTAACCAATCAAAAACTGCACCTAGACATGTCATTGCAGAGAGGAAAAGGAGGAAGCGAGTCACTGAACTTATTCGTACCTTGTCAGCTCTTGTTCCAGGTTTGGAGAAGGTACGTTAAATTATTCATAATCTCCATATTAGCAGCACTGTATGAAACTGTTTCCATATAGTTTCCTCGAATATACATGACATTTACGCAAACGTTAGTTTACATTTTTTTTTAATTTCCCTGAACTTATACAAGTAGAGAGACAAGGCATCAGTGCTCGCAGAAACAATTGACTATATCAAACATATGCAAGAAAAGGTGAAGACGCTCGAACAGCAAGTAGTAGCAGCCGACAACAGAAATGCGGAGGCTGAGCTTGAAAACGAAAAGCCTAAGCTTGTATCAGTTTCAAGCACCGATGAACGAAATCCAAAAATAGAGATAAAAGTTTTCGGAAACACATATTTAATCAAGATGCCCTGCTTTCACGCTGGCAGAGGAACACTGGTGAAAGCACTTAATATTGTTGAAAGCCATCATTTGAGAGTGCTTTCTGCAAACTCGGTGCAATTTTCAGAACAGATTCTTGATTTGACGATTATGGCCGAGGTACTGAAATTTAAAGCCCAGATTTTATTGTTAGTAAGCCATATATACATACATGTGCATATTTTCACAATTATAGAACATGTTTGAAAACCTGTGAAAACTAAATCAAGCATGCCTTTGTATATTAAAGAACTACAAGTGAAAACCTCTTAAAATTGACATTCACAGTGCTAAAAAAAATGAAAGAACCATGGAAAGAAGGTAATTATGTATATATGCACATTGTTCCTACAAAAGAAGAGCTCAAACGTATGATTTTTAAAACTTTTGCCTAAAGCATCATGACTCTCACCACTTGAGCGTCCTTGAAAGCGACTAATGTTTTTAGTCCTTATATTATAAAAAGTACTTGAAAAGGAGTACGGTTGTGCCAAAAAAAAAAAAAAATGTATTTTTTTTTTATTTTCTTGTCATTGATCGTGTTTCACCATATTATATATAGGTCGAAGAAGAATCTGGAATGTTGGTGAAAGATCTTTTACAGAAGCTACAATTGGAATTTAAAAGGAAGCATGAATAGTGTACGATTATGTATTTAGATCGTGAGTTTGTCATTTGAAATTATGTGATAATTATAGAGTTTTGGCACGAAACTTATTATTATGAAAATAATACTAATAATAATAATAATAATAATAATTCAATAATAGAATCAACAAAATTTTGTATATTAGTGCAGAACAGATGATAATAAAATGTTTATAAGTATCATGCTCAAGTTTATAAGTATCATGCTCAAGTGTTAGTTGAATTTCCTGAGGAAAAATCCATGAAACTGTTCATATTGCTTGCGAGAGGAAGTCCTCTCTTAACGGCCGTCAATGAATCGCCAGCAACTGACCGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246518.1	5.7e-24	transcription factor bHLH18-like
Swissprot	Q1PF16.1	2.8e-15	bHLH transcription factor bHLH019
trEMBL	A0A5P1E657	4.1e-24	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G22760.1	33.75	2e-18	89.7		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g290097	AT2G22760.1	160	91	4	96	243	117	273	33.75	2e-18	89.7
g290097	AT4G37850.1	165	84	6	91	243	146	304	38.18	5e-18	88.6
g290097	AT2G22750.2	162	88	5	96	243	124	281	34.57	5e-15	78.6

Ortholog group

Species	Genes
Allium cepa	g111679.t1; g111682.t1; g290097.t1
Allium fistulosum	AfisC6G04367
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	99	144	39.4	3.8e-10

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network