result

Gene information

Detail information of g309597


Location
GeneChrStartEndStrand
g309597Scaffold_65519:HRSCAF_448605339358342848-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020246933.11.4e-62calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG2.17.1e-51Signal-responsive protein 5
trEMBLA0A5P1E7G98.1e-60CG-1 domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G67310.152.054e-55 211Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

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Ortholog group
SpeciesGenes
Allium cepag221341.t1; g221342.t1; g309597.t1; g532723.t1
Allium fistulosumAfisC5G06094
Allium sativumAsa4G05370.1; Asa4G05384.1; Asa4G05385.1
Arabidopsis thalianaAT1G67310.1
Oryza sativaLOC_Os01g69910.1; LOC_Os01g69910.2; LOC_Os04g31900.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03859.13CG-1Domain14127161.07.6e-48

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000982Ftranscription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001077Ftranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001228Ftranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0016070PRNA metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032774PRNA biosynthetic process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K21596CAMTA; calmodulin-binding transcription activatorEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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