result

Gene information

Detail information of g329877

Location

Gene	Chr	Start	End	Strand
g329877	Scaffold_68245:HRSCAF_451331	37081	39719	-

Sequences

CDS

Protein

Gene

>g329877.t1
ATGGTGGATCCTGTTACCTTCCAGTTCTTTCCTGCAAGTGAGGCGGCGGAGGATGGGAACGCAGGTGGTGTAGTCACCGCAGCTCCTGTTATTAAGAAGAGCAGACGGGGCCCAAGGTCTAGGAGTTCTCAGTATAGAGGTGTTACTTTTTACAGAAGGACTAGTAGATGGGAGTCCCATATTTGGTTAGTTCAAATTTTAAATTAATTTTTCCCATAGTTTATTTAAAAGATTGATTTTGATCAGATTATATCTGAATAAAAATATATTGACAGGGATTGCGGAAAACAAGTGTACTTAGGTATGAAAGTTTTTAACCTTTTCATATTCGATGTGTTTTTTTCTGGAGTGAATATTTTCCTGGTGTTAATTTTGGCTTGTTTTTCATTCTTTATACAGGAGGATTTGATACTGCCCATGCTGCTGCTAGGTAAAAGTTCTTCATTTCATTATCAGATTTTTATTATTGCATCCATTTGAGTCATATATCATACAACTATTCTTTCAATTGCTTTGATCCAGAGCTTATGATCGAGCAGCGATTAAGTTTCGTGGCGTTGAGGCTGACATTAACTTCAATTTGAGCGATTATACTGATGACTTGAAACAAGTGAGTTTATACTATTCATTTCTCTCTCATGTTTTTTGCTCTGCGATCAAACTAATTTTGTAATATCCCCCTCATGCATAGTAGTAAGATCAAGCTAGAGAATAGGCTTTAACGTGATGATTTTTGCTGTCGTGTTACAGAAACTGTGAACTATGATAAACTCAACTCTGTGTAGATTAGATCTTGTGTTTCTGTAGTAAGAGTATATTCTAATATATGTTGACCAAACTACTTCTCTTCTGAAATTGTTTACCTCTCCATCGTGAGAATGACAGAAATCCAATCATGATGTAGCTGGCGATTCGTAGAACATAAACTTCAGCTATTCAATCTGAACTGTTAATCTATTTATATCTGGTGATATACTATCTCTATAGATTACAGTATGATATTAAATGACTATAAAGCCACATCTTTGGAAATATATACCAAATGTGCATATGAGCTGCAAAAATGTTAACACGATGGATATAAGTACAGATGGGCAATATGTCAAAGGAGGAATTTGTTCATGTGCTTCGTAATCAAAGCACAGGATTCCCAAAAGGGAGTTCAAAATATCGAGGAGTCACATTGCACAAATGTGGCAGATGGGAAGCAAGAATGGGGCAATTTTTGGGCAAAAAGTATGTCTTCTAATAAACATATTTATACATTTTTTTTCTTTAATAATTACTTCACCAGCTTTATACTGATGCACCAAATATTTATTTTTAACAGATATGTTTATTTGGGCCTCTTCGATACCGAAATAGAAGCTGCCAGGTATAAAAAATTTCTCAGTCTTTACATAAAACCATTATCTTTTGACTGTTTTCTGATTTGATAAGGTGCATCAATCTGTTATGGATGGATAGTACCTTTGTTATCTAGTTGTTTCAGCCTTATGTAACTAGAAAAATCAGATTTTGTTACCAAAAATATAGCCACAACATGTAGTTTCGAGTGTTATGACTTGTGATACAGAATCGTACATCTCCTCCTACTGCAGATGGTTTTGGTTGTGATTATGAATTGAGAATTGATCTCTCTGTTGTGCTACAGGGCTTATGATAAAGCTGCAATTAAATGTAATGGAAAAGAAGCTGTTACAAACTTTGACCATAGCATCTATGAAGATGAACCTACTTCTATTGGTACTTAAATTCTTGATATTCTATCAGAACAATAATATTGTGAAATTTCTAGACATAGCACTCATGAGTATTGCTATTAGCAGCTTTCACCACTAGCGAGCATGACCTTGAATTGAGTTTGGGGAGTATGAGTTTGAAGAGAAATAATGTAGAATTGTTTGACGAAGGCATTACTCATGGGGTGGATCAAAGAGTACAAATACCATCTGCTTCAGATTTGAACAGAAACATCAGGTCAAAGGTACTTGCTGTATGATTATTATATAGTGTATGATCCTTATGCACATTGTTCTACTGTTGTCATTGCATTCCACTACTTATTTAAACTTCAGAAATACAACTGTAAGTATCACCAGCAAAGAATATACATTATGTAGCACCATAATACCATATTTGGTGAACAATTTGAAATGTAATAGTCAAAATACCAACTTTGATGTTGCTGTAAGACATATTATAGGTTTAGAAAGAAAGAAAAGAAAAGAAGTATACTCAGCTGAAGTAAAAGCTTAAATGGTCTATGGCTTATGCCGAATTTAATTTCCAAATTTTGCTGGCCATCCCATGACTTCTAACTCGTCAATAGTTACCATTAAATCACGTCTGCTATGTCTAGAAGCCATTTGAAGAATGGAAGTAATGTTAACCAGGCTTATCCTTATTTAATGCAGTTTTCAGGCGAAGATGGTGAAGAAAGTAGATGCAATGAAGGGCTTTTTTTATCATTAGGAAGTGACAAACAAAATGAATTACCGACTAATGTGTTGGCAACAAATGCAGCATCATCAGGATTCTCGCCGCAGTTAGTCAAACCGACACCAGTTTGGTTGCAGAGGGGAATGAGCTTCAGTCTCTCACGAGATCAGCTCGGCTCCTCCTCTCTGACGCTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265583.1	4.6e-118	floral homeotic protein APETALA 2
Swissprot	P47927.1	7.6e-94	Floral homeotic protein APETALA 2
trEMBL	A0A5P1EYR3	7.1e-113	Polyadenylate-binding protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36920.1	81.77	3e-82	301	AP2;AtAP2;FL1;FLO2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g329877	AT4G36920.2	203	33	1	21	219	108	310	81.77	3e-82	301
g329877	AT4G36920.1	203	33	1	21	219	108	310	81.77	3e-82	301
g329877	AT5G67180.1	340	94	8	1	317	37	350	57.94	2e-81	299

Ortholog group

Species	Genes
Allium cepa	g256880.t1; g329877.t1
Allium fistulosum	AfisC4G04821
Allium sativum	Asa1G03964.1; Asa2G01500.1; Asa2G02444.1; Asa2G02445.1; Asa3G00682.1; Asa3G00683.1; Asa5G04165.1; Asa5G04167.1; Asa8G03944.1; Asa8G04167.1
Arabidopsis thaliana	AT3G54990.1; AT3G54990.2; AT4G36920.1; AT4G36920.2; AT5G67180.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	43	92	34.7	1.4e-08
PF00847.17	AP2	Domain	135	185	38.8	7.4e-10

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0010073	P	meristem maintenance
GO:0010093	P	specification of floral organ identity
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035670	P	plant-type ovary development
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048444	P	floral organ morphogenesis
GO:0048449	P	floral organ formation
GO:0048467	P	gynoecium development
GO:0048481	P	plant ovule development
GO:0048507	P	meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network