result

Gene information

Detail information of g330903


Location
GeneChrStartEndStrand
g330903Scaffold_68360:HRSCAF_451446493922496876+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020273439.13.9e-55protein REVEILLE 2-like
SwissprotF4K5X6.16.5e-39MYB family transcription factor Circadian 1
trEMBLA0A5P1EJJ32.8e-55HTH myb-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G37260.139.542e-40 163CIR1;RVE2Homeodomain-like superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag266049.t1; g330903.t1
Allium fistulosumAfisC1G06381; AfisC3G06679; AfisC3G06680
Allium sativumAsa1G00202.1; Asa1G01867.1; Asa2G05215.1; Asa7G03132.1
Arabidopsis thalianaAT1G18330.1; AT1G18330.2; AT3G10113.1; AT5G37260.1
Oryza sativaLOC_Os06g51260.1; LOC_Os06g51260.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain206343.81.9e-11

Gene Ontology
AccessionOntologyName
GO:0001101Presponse to acid chemical
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0007623Pcircadian rhythm
GO:0008150Pbiological_process
GO:0042493Presponse to drug
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009734Pauxin-activated signaling pathway
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009755Phormone-mediated signaling pathway
GO:0009791Ppost-embryonic development
GO:0009845Pseed germination
GO:0009889Pregulation of biosynthetic process
GO:0009909Pregulation of flower development
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010600Pregulation of auxin biosynthetic process
GO:0010817Pregulation of hormone levels
GO:0014070Presponse to organic cyclic compound
GO:0046677Presponse to antibiotic
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032350Pregulation of hormone metabolic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0046885Pregulation of hormone biosynthetic process
GO:0048511Prhythmic process
GO:0048580Pregulation of post-embryonic development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071310Pcellular response to organic substance
GO:0071365Pcellular response to auxin stimulus
GO:0071495Pcellular response to endogenous stimulus
GO:0080090Pregulation of primary metabolic process
GO:0090351Pseedling development
GO:0090354Pregulation of auxin metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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