result

Gene information

Detail information of g331509

Location

Gene	Chr	Start	End	Strand
g331509	Scaffold_68434:HRSCAF_451520	152196	154347	+

Sequences

CDS

Protein

Gene

>g331509.t1
ATGGGTCCATCTGGCTACATCTCTCCTGTGTTAAAAAAGCGAAAACATCATGAACTATTTTATGCTGCACCAGCTAAGGATCAACCTGTTCATAGGCTTGCACCATTCTCGCCGGTAAGCTACTGCATGAACTTTTGTTAAGTTGGTAATAACACTTAAAATGTTTCAATCATCACACATTGAATACCTTGGATTTCTTAACTGCACTTTAATACAATATGGTATCAAAATTTCCCATGATCATATTTCGGTTATAACATCCGACATTTCAAAAACTACTATATTTTAATTATGATGAAATTTCCAATATATATGTATGAATATATACGAATTTTATCAGGCTAACAACAATTGATTAATTAATAACATGTTAAAAACAAACCTTATTAATATATGTATGTATGTATGTATGTATGCTTGATTCCTTACCGATTTTCCCTATTGAATTAATTGCCATTCGAAATGTTGTCCCAGCATGAATTTTTGTTTTTTTTGTTTGGTTGGTGTGTGGAAGGGGGAGGGGGTGGGTGTGGGGTTGTGTGGAATCATTTTCTAACGCAACACAGTATTTTATCCACTACCAACACTGATTTCAGTTACTTTAATTTTAAGACTGCTCCTTTGAGGGCTTCAAAGTCTCCTATTGTAACTTGCTCACCTACAACCACAACCCGTGCTAAGAATCCTGCCATCCCACGTCCATCTAATGTTACATACAGGTGCATATTTATATGGCTCTTACAACATTCTACACGATAAGTGTTTCCAAGAAACAAAATTTGGCTGCTGCTTTTATGCTAAATTCTGTTGTGTTTGCAGACGGCTTCTTGCTGATGTTGTTCAGAAAGATGAAATCAAGGAGCTTTGTGGGATTTTGTTGTTAGTGTCAATAGAAGCTGCAAAATCACTCTTTGGTATAGTAAATGCAATGTTTTTTGAGTATTGCCTAATAACTCTCTTATTAATGCACTGAATTCCATTGTCATTTTCCCTTTGGCATATATACTTATGCTGTTTTCCTGTAATATTTTTCTTCTATTTTTGCAATTTTTTTCACTCATGTCCATGTTTATCAAGCAAAACGTTATTGTTATGCGACATTATTTACAATAATATATTGCTGTTATAAGCTAAGTTCTTGATAACTGTTTTGAGTTCTATATAATTTTCATATAAGCTAAGGTAAGAGGGTGGAAAGTGAAATATTTATGTTTGGTGTTTCATATATCATATTTATCATTAGTTTACTGAATATTTGCAGAGGAAAAAACCGGGCACCCTCTTGCCTTAGCTAAGCATTTAAATAATGAAACTGAAAGAGATACAGAAGTACAGAAGTCAAACAATGATAGACTAGGTGGTTCTCAAATAGACAAACCAAAAGCAGAAGAATCCTAATCAGGCAATGAGGACGATGATGTGCAGACAGAGAGTAAACCTGTGTCACCTGAAACACTTGCATTGATGTGCGATGATGAAGACACAACGTTCATTGCTTCTAAAAACCCTAGTCCATCCCCAAAATTGCAAGAAAATCTATCAGAGCAATATGTGGAACAGGAAAGGAGTGTGTTGACTGCTTTTCGTGACTGTCTTTTGAAATTAATCAACTGTGCTGCAACGAAAGGTACCGATTCACTATCAATGTTCATACCTACTTTATTCCTCACAAACCATTGTATCATTGTTAGACTTATCTATAGCATATAACTGAGGATTAAGAACAAAATATCAGTTGATATAGAAAATAATCAAAAAAGCATGAACATTCTTGTGCCACTGCATGGTCGAACAGTAGCAGACTACTATGTGTATCATCCAAATAAAGTCTAATTCTTAATTCTCTTTGTGGTGCTTTATAGAAGCGAAGTACGCATCATTGATGATGAGCTCTGAGCCACCTACTTATCAAAGTTCAGTAACAAATGACGTTACAAGGGTTATTACAATGTGGTTGAAGATCCCACCTACTTATCAAGCCCCTATAACTAATGGCATTACACGAGTTACACAATCTAGTGCTACACAGGTGTCTCAGACTCAGACTGCGGATGGAATTCATGATTCGTTTGATAATCACTCGCCTTATAGCATCAAAATAAATCCAGTAAACTGTGGTGAAATGCCAAGTAAGCAGAACTCTGTAGCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263972.1	5.3e-44	protein tesmin/TSO1-like CXC 5, partial
Swissprot	Q9SL70.1	5.0e-23	Protein tesmin/TSO1-like CXC 6
trEMBL	A0A5P1EV71	3.8e-44	CRC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20110.1	31.96	6e-31	131		Tesmin/TSO1-like CXC domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g331509	AT2G20110.1	291	158	10	1	278	271	534	31.96	6e-31	131
g331509	AT2G20110.2	292	165	11	1	278	271	541	31.51	1e-29	127
g331509	AT4G29000.1	294	144	11	1	260	285	559	32.99	4e-27	118

Ortholog group

Species	Genes
Allium cepa	g146559.t1; g222487.t1; g331509.t1; g454037.t1; g4569.t1; g493495.t1
Allium fistulosum	AfisC4G01515; AfisC4G01518; AfisC6G04123
Allium sativum	Asa4G01357.1; Asa8G02952.1
Arabidopsis thaliana	AT2G20110.1; AT2G20110.2; AT4G29000.1
Oryza sativa	LOC_Os01g55580.1; LOC_Os01g55580.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K21776	LIN54; protein lin-54	EC:-	Cellular senescence	ko04218

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network