result

Gene information

Detail information of g331720

Location

Gene	Chr	Start	End	Strand
g331720	CHR6	58979259	58984785	+

Sequences

CDS

>g331720.t1
ATGGGCTGGCTGAACAAATTTTTTAAAGGTTCTAGCCACAAAATTTCGGAAGGACAATATCGTGAGAAGTATGAAGATGATAACACTTGGAGCAACTCCGCTATTTTAGTGGATGATCTCTCAGACACTGAAAACGAGGACATTAATCATGCAATTGCACTTTCTCTTCTAGAGGAAGAACATAACAGGGCAAAGGCAATAGATAATGGATCTCACTTGGAAGAAGATGAGCAACTTGCAAGGGCATTACAGGAAAGTTTGAATGTTGATTCTCCTCCTCATGCTCATATACCTCCTGAGGTCATTCACAATTCCCAACCATCACCATATATCTTTTCATCTGGATTCAGGATATGTGCAGGTTGTAATACTGAAATTGGCCATGGTCGCTTTCTTAGCTGTATGGGTGCTGTTTGGCACCCAGAATGTTTCCGATGTCATGCTTGCAATCATCCAATATCTGACTATGAGTTTTCTATGTCTGGGAACTATCCATATCACAAAACTTGCTACAAGGAAAATTACCATCCAAAATGTGATGTTTGTAAGCAATTTATTCCAACGAATATGAATGGCTTGATTGAGTATAGAGCACATCCATTTTGGTTGCAAAAGTACTGCCCGTCTCATGAGGTTGATGGTACACCAAGGTGTTGTAGCTGCGAAAGAATGGAGGCAAAAGATGCAAAATATGTGACTCTGGATGATGGGAGAAAGATATGTCTGGAGTGTTTGGACTCCGCCATACTTGACACGAGTGAATGCCAACCTCTGTACCTGGATATACAGGATTTTTATGAAGGTCTAAATATGAAAATCGAACAGCAGGTTCCTCTACTCTTAGTTGAGAGACAAGCTCTAAATGAAGCCATGGAAGGCGAAAAAAGTGGCCATCATCACCTTCCTGAGACCAGAGGTCTTTGCCTATCTGAAGAGCAGACTGTTAGCACGATTTTTAAAAGGCCTCGGATTGGGGCAGGTAACAAAGCAATGGATATGGTAACAGAACCCTACAGGCTTACTAGACGTTGTGATGTAACAGCTATTCTTATTTTGTACGGACTTCCAAGGTTATTGACAGGTTCAATACTCGCTCATGAGATGATGCATGCCTGGCTGAGGCTCAAAGGTTATCGCACACTCAGTCAAGAAGTTGAAGAAGGCATATGCCAAGTCATGGCTCATCTGTGGCTCGATTCAGAAATCATGTCTGGCTCTGGCAGCAATGTTGCATCAACTTCTTCTTCATCATCATCAACAACATCGTCAAAAAAAGGAAATAGATCCCAATTTGAAAGAAAACTTGGAGATTTTTTCAAGCATCAGATCGAATCTGATACTTCTTCAGCTTATGGAGATGGGTTCAGAGCTGGTAATCAAGCTGTTACTCTATACGGCTTGAAGAGTACGCTTGATCATATTAAATTAACCGGGAGTTTCCCTTTTTGA

Protein

Gene

>g331720.t1
ATGGGCTGGCTGAACAAATTTTTTAAAGGTTCTAGCCACAAAATTTCGGAAGGACAATATCGTGAGAAGTATGAAGATGATAACACTTGGAGCAACTCCGCTATTTTAGTGGTAATCTACTGCCTGAACTTATTTCTCAATCCTTTATTTCATTTTCTATCAGTTTTATGTGTCTCTTTGGCATTATTTTATACGCATAGCACCTATTTCGACTAGTGAAGTCACTAAATTGTCGTGCGTGTTTTATGGGCATCGATCAAATGCTTTATATGGTAGATAATGTTGTAATTGTGCCAGGTAGAAGTGCTTTCTTCCCTGGGATCATGATTTTTTTTCTTTGAATTCAAGTTAAAAAATAAAATAAAGAAAACAATAGAGAGAAAGATGAATAAGATTATGAACTCTACTTTGATGGCAACTATTATTTGCAAGATCCCATAATTTATAGAGCATTGTTAAAGGGCCCTAATAATTGTTATTTTTGTTCTCTGTGTGTGCGCGCTCGCTCATATAGTCATATAGTTCTTTTTTTTCCTCATGCAGTCTATCGCGTATTGAATCATATCGACTCTAAAATTGTTCCTGTTGACATTACAATTTCCATTGTTGTATGTTAGGAATAAAATTTAATTTTAATGCATGCACCGCACATTGAACAGTGTTTTAGTTGACAGTAAGTTGCACTTACAACCCTTCATAATTGTATTGTGTAATCAACTACTCGTAATCGGATTATCAAAAAACATAGTAGCACATGGAATTGAAAAAATTATGTACACAGACACCTATTATTTAGTTGTATGATGATCGAGTACCACACAGTCAAATCGATAGTGCTATGTTGTGCTACATTCCTGTTAAATTTCTTCTCTCTGATTTTTTTTCCTGCAGGATGATCTCTCAGACACTGAAAACGAGGACATTAATCATGCAATTGCACTTTCTCTTCTAGAGGAAGAACATAACAGGGCAAAGGCAATAGGTTGGTATCATACTTATACCTGATCTTGTATTCTGTATGCTGTATTCACTTTTGAGCAATTTGCCCATCTCCCTGGCATTTTAGTAAAAGTCAATAGTACAAATTTATTATTTAACCGTTTCCAGTAGACACTATCATATATGTTAACCCATACCGATCAGCTCATTATGGTTTCTTAACGTTCATATAAAGACAATATCATATATGTTAAACCATACCGGTCAGCTCATTATGGTTTCTTAACGTTCATATAAAGACACTATCATCTATGTTAACCCATACCGGTCAGCTCATTATGGTTTCTTAACGCTCATATAAAGACACTATCATATATGTTAACCCATACCGGTCAGCTCATTATGGTTTCTTAACATTCATATTGGTCACATCCTTTGTTTGCATGAATTGAAAATTTTAATGTTAGTGCACTGCAACCAAGATCAATGAAATATATTGCTTTTTATCCTTCAAAAAATGTTTGAATATTTGCATATACAACAGTTCCAAATAACCACGTACTATAATTAGATAATGGATCTCACTTGGAAGAAGATGAGCAACTTGCAAGGGCATTACAGGAAAGTTTGAATGTTGATTCTCCTCCTCATGCTCATATACCTCCTGAGGTCATTCACAATTCCCAACCATCACCATATATCTTTTCATCTGGATTCAGGTACCCTTTTGTTCATTTTTATTTACAATCCTATTCTTTACATTACATACGTAAATTCTGTTTTACTATCTATGATGCATCAAGTTAACTTTGATCCACCGCCAAAAGGTAGTCTATGAGATTATATAACGAAAGTGAAATATAGAAATGAAGGTTTACTTTTCTTTTTGATCTGCAATACCTTGAAAGATTTGGCAAAGTACAATCATTTAGTACAGTTATTTGCTTCTGTCTATAATTTACTGTCAATTTTTCTTCCTAACATTACTATCCTTCTTACATCAAATGTTCTATGTTGATTGTTGGGTTATAACCTTTATTTCTTTTATATACAAGGATAATATTAAAATAGGCGGTTCTTTTCCAGGATATGTGCAGGTTGTAATACTGAAATTGGCCATGGTCGCTTTCTTAGCTGTATGGGTGCTGTTTGGCACCCAGAATGTTTCCGATGTCATGCTTGCAATCATCCAATATCTGACTATGAGGTCATTTATATTAACATAAGTTGTAGAACTAGAGGCATATTCATAGATTTGACTTGGAACTTGCTATTCTGCTTGCAGTTTTCTATGTCTGGGAACTATCCATATCACAAAACTTGCTACAAGGAAAATTACCATCCAAAATGTGATGTTTGTAAGCAATTTGTATGTGCTGTATCTTATTTTGGCAGTTTTTTCTTTGTCAGTTATATATTTCATTTAATACCTTATGTATGGAACTCTGCTGGATAAGATTTATCCCTTTAATATATTAAGTCATCAAACAGATTCCAACGAATATGAATGGCTTGATTGAGTATAGAGCACATCCATTTTGGTTGCAAAAGTACTGCCCGTCTCATGAGGTTGATGGTACACCAAGGTGTTGTAGCTGCGAAAGAATGGAGGTCAGTCTAATTATTTGCTGCAAAGAAGGCAATAATGCATCTAAAATATGTATATATGCATCATGCACATAAAATCTTTTATGTTAAGTACATGTGCATCTTGTCTAATTAAAGCGTTAAACTTGCCATCTCAAGTGAAGTCTACGTCAGCACATTATACACCCAACATTATATCTAAAACCGAATAATAGATAAATATTTACACTTCTGTGTGTTGTTCTGGTATACAAATACAAATCCATGCAGTCTATTTTCTTTTCAAACATGTAAATAATTTATTATGCAAACAAGAGGCACAGAGAAAGTCATTTGTTGTCTTGTACTTGCAACATGCTTAGCTTTCAACTCTATTCTCAAGTATAATAGCATATTTTACTTCACCCTAGTTTATTTGCTATAAATTATGGCTATTAATTGGTTTTATTAAGAGCCAAACTTCTCTTATGTTCATCTTTTATTAAATCACAGGCAAAAGATGCAAAATATGTGACTCTGGATGATGGGAGAAAGATATGTCTGGAGTGTTTGGACTCCGCCATACTTGACACGAGTGAATGCCAACCTCTGTACCTGGATATACAGGATTTTTATGAAGGTCTAAATATGAAAATCGAACAGCAGGTTCCTCTACTCTTAGTTGAGAGACAAGCTCTAAATGAAGCCATGGAAGGCGAAAAAAGTGTAAGGCAATGCATTTTTATTGACTTTCACACATGTATTATTTGATCCTTTTATTTATTTATCTATAATCTTTCTAACTCTCGATTTTTTTGTAGGGCCATCATCACCTTCCTGAGACCAGAGGTCTTTGCCTATCTGAAGAGCAGACTGTTAGCACGGTATGGATTACTACAATATGCTTATCAATGTGAATTTACGCCTTTCATTTTGCTATTGTGTTAATACCTTCAATTAAATGTCTTTTTACAGATTTTTAAAAGGCCTCGGATTGGGGCAGGTAACAAAGCAATGGATATGGTAACAGAACCCTACAGGCTTACTAGACGTTGTGATGTAACAGCTATTCTTATTTTGTACGGACTTCCAAGGTAATCATAACTATTAGTAATTCAAAAATGAACTTAGTATTTAGTATAAGAAATTAAGCTAGCATCTTAATCTCATTATGTGAATTTGCAAGGTTTACACTATATTGGTCAGTTATATGCTTTTAGGCACCCAAAGTCTTTTTCTTGGCCTGATTCTTGCAAGTGTTAGTAGTGTATATAGCAGGCTTATCATTGCATTCACATTACGATCTGTATGACAGTCTAAAAACATTTAAGACTATTTGTCAGAACAAATCTTGCAAAGTTTTTGAAAAGCTAACTAGTTTTTTCCTCTCCATTTTATATAGGTTATTGACAGGTTCAATACTCGCTCATGAGATGATGCATGCCTGGCTGAGGCTCAAAGGTCCTTTATTTTTTTTATCACTATCAATTTGTCTATCATAATTGATAATATTACAGGAAATTGTCTAATGTAATTTAACTGAATGAGTGATTGCAAGTGCAATTTTCTGTCCTTTATTTTGTCACAGGCCAGTGAATCTGACACTTTAAATTTACAATTATTTTGGTTGAAGCGAACTAGTTGGTTTGGTTTGGTTAATCTGAAGATGAAAATTGTTAAACCGAACTAAAACCAATAAAAATGAAAATCAAACCGAACCAACCAAATTAAGTTTGGTTGGTTTGATTTGTTATCCGATTTAACCGAACTAAAAACGAGTCGGATTTTATGTTTAGAATATTCATTGTAATTTGAAATAAAACCTAAATATACCGTTATAGTATTTTTATTTAGCATTCTTATGCTTTATAATAGTAATTTCGACATATATATGATAAATAAAACCTATTTAGATCGCTAAACCAATCTAAATTTTTTTTAGAACATTAGTAATTTTGAAAATATAATAGAAGTTCAGTTAATTTAGTTAAATCGATGACCAAAATAATTTTTTTTCAGGGCCAATTATAAACCAGTGTAGTTTCAAAACCAAACCGATCGAACTGAATTGGTTTGGTTGGTTTATTTTGTTTAATTGAAGATTGGTCACCCCCACTTGCTCTACACATAAACCTGAGGTTTATATTATAAGATAACAGATGAGGCTACAGATTATACAAACATGCACTTCATTGCAAACCAATCAAAGTCACTGATATCCACATTGAAAATGCTATTTCTTTGGGGTGTTTGTCACCAATGGAGGTTTTGAAACTGTATGTAATAACGTTTTACATTTTTGGAAAAGTTAGCCGTGAAATTTATAAGCTCCTAACACAATCAGTTTCTTATTTTCTTGGAGTTTTAAAATCATCTATCCAAATTTCCGCAAGTATTAGTTGGTTGTTTATTGGATATAAGAAGAAGCCATGGATTCAATAGAACACGGAATAAGTTGAAGTTCCAAAAAGATGCATTAATGGTTTAGTATCAAATTGTGCAATCTTAAACTCATTCTTCCTCCTCCTTACCATGAGTTGAGGTTGGAAAGCATTTTAGAGGGTTTATAAATGAACTGATGGGTTCTATTATATCTCTACCAACAGAGATGACTGTAACTCAGTTTCGGATTTGTGCAAATTGTTTAAAATCCGAAAGTTTAGTGATGCACTTTTTCAAAGTTCTATACTCTGATTTAACAGGTTATCGCACACTCAGTCAAGAAGTTGAAGAAGGCATATGCCAAGTCATGGCTCATCTGTGGCTCGATTCAGAAATCATGTCTGGCTCTGGCAGCAATGTTGCATCAACTTCTTCTTCATCATCATCAACAACATCGTCAAAAAAAGGAAATAGATCCCAATTTGAAAGAAAACTTGGAGATTTTTTCAAGCATCAGATCGAATCTGATACTTCTTCAGCTTATGGAGATGGGTTCAGAGCTGGTAATCAAGCTGTTACTCTATACGGCTTGAAGAGTACGCTTGATCATATTAAATTAACCGGGAGTTTCCCTTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242041.1	4.8e-233	protein DA1-related 1-like
Swissprot	Q8W4F0.3	2.9e-179	Protein DA1-related 1
trEMBL	A0A804JLY9	4.5e-233	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36860.1	73.54	0.0	646		LIM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g331720	AT4G36860.1	427	103	4	56	481	136	553	73.54	0.0	646
g331720	AT4G36860.1	61	31	1	1	61	1	60	47.54	2e-07	53.9
g331720	AT1G19270.1	536	153	8	1	481	1	531	60.26	0.0	631

Ortholog group

Species	Genes
Allium cepa	g206664.t1; g331720.t1; g342402.t1; g363944.t1
Allium fistulosum	AfisC2G05310; AfisC3G01668; AfisC3G03286
Allium sativum	Asa0G03349.1; Asa2G00720.1; Asa2G02641.1
Arabidopsis thaliana	AT2G39830.1; AT4G36860.1
Oryza sativa	LOC_Os03g16090.1; LOC_Os03g16090.2; LOC_Os03g42820.1; LOC_Os03g42820.2; LOC_Os03g42820.3; LOC_Os03g42820.4; LOC_Os06g08400.1; LOC_Os06g08400.2; LOC_Os12g40490.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02809.17	UIM	Motif	43	56	10.7	0.36
PF02809.17	UIM	Motif	74	87	11.1	0.27
PF00412.19	LIM	Domain	119	173	37.6	1.7e-09
PF12315.5	DUF3633	Family	268	477	337.3	2.3e-101

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0008152	P	metabolic process
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0008233	F	peptidase activity
GO:0005488	F	binding
GO:0006508	P	proteolysis
GO:0006807	P	nitrogen compound metabolic process
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0008285	P	negative regulation of cell proliferation
GO:0009791	P	post-embryonic development
GO:0009908	P	flower development
GO:0010154	P	fruit development
GO:0016787	F	hydrolase activity
GO:0019538	P	protein metabolic process
GO:0022414	P	reproductive process
GO:0032182	F	ubiquitin-like protein binding
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035670	P	plant-type ovary development
GO:0040008	P	regulation of growth
GO:0042127	P	regulation of cell proliferation
GO:0043130	F	ubiquitin binding
GO:0043170	P	macromolecule metabolic process
GO:0044238	P	primary metabolic process
GO:0045926	P	negative regulation of growth
GO:0046620	P	regulation of organ growth
GO:0046621	P	negative regulation of organ growth
GO:0048316	P	seed development
GO:0048317	P	seed morphogenesis
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048444	P	floral organ morphogenesis
GO:0048445	P	carpel morphogenesis
GO:0048467	P	gynoecium development
GO:0048481	P	plant ovule development
GO:0048482	P	plant ovule morphogenesis
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048638	P	regulation of developmental growth
GO:0048640	P	negative regulation of developmental growth
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051093	P	negative regulation of developmental process
GO:0051094	P	positive regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1900055	P	regulation of leaf senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1901564	P	organonitrogen compound metabolic process
GO:2000024	P	regulation of leaf development
GO:2000026	P	regulation of multicellular organismal development
GO:0090696
GO:0090697
GO:0090698
GO:0140096
GO:1905392
GO:1905623

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network