result

Gene information

Detail information of g338175

Location

Gene	Chr	Start	End	Strand
g338175	CHR5	41423770	41425169	+

Sequences

CDS

Protein

Gene

>g338175.t1
ATGACTGTCATAAGAAAAAGAGATCAATTTCCTATTGGAATGAGAGTGCTTGCAGTTGATGATGATCCAACCTGCCTCAAAGTTCTGGAATCGCTGCTTCATAGATGCCAATATCATGGTTTGTCACTTGTATTTTACTTTATGTATATTATTATGTGTTCTTTATGTTCAAATCTTAAAGAAGGAGCTTTATTTATTTATTTCGTAGCTTGTTCTTGTTATAGAACCGTTAAGGATCTTAAAATTGATAACTTACAATTTGGTATATATATCATCATGTAATAAGCAAAAGTAGCAATTTCGACTCTTTTAGGTATATCTGTTACAAGGTTCTTATGATCATGTGGTCTGGTTGTCTTGCACTTTAAAAGTTGTTGCAGAAGTCTTTTTTAATACCATCCCCCTACAACCAACAACAAACCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAACACCCTCTTCTCTTTTCCTTGTCCTGGTAATGATTTCCAATTTAGAGCTAGGTTGCATTTGATTCAAATAAGAAGTCTTAATTTCTGATATTAGGTCTGTCTGTTTAAAATTATCATTTTATGATTATTGTGTTTTTTTTACAATGTAATGCAATAAGTTCAGGCTGCTTTTGTTTTGATTGTTGTGTTTTCTTCTTCTTTTTTTTTTTTTTACAATGTAATGCAGTAAGTTCAGGCTGCTTTTGTTTTGAACTAGAAGTTTGATTGTTGAATATTCAGTGGCTTTAAGCATGCTTGTTCACAATTGCATGATAATTTTTTTTCCGTGTGTATGTGTAAAAACATAATTAAGTATTGATAATTTTAATAAGTATTACAAATGTGTTTAGTTCTGAATGGTTATAAAATTAATTAAATACCACCTATCACATTAAACATATTTTATGTGAAAAATAAATGAGCCTCAGTAAGCACTGCAAAAGTGCTAAATGCACAACAGTCATCATGAACCCGCCATTGTAATGAGTGTGGAATGACAGTAGTGGTTTTTTAGCTCAAAAGCAAGAAGTATTACATTTCATTTTACGTGTATTGAAGTTGTTAATGTTTATCCTGTACATTACGAAAATGCTTACAACTATTATATTACACAATAAACAACACTTAAAACTGTTGAAGTTTTTATTTTAAACAAATGCAATCATAAATGGTTGTAGAATTACTAATATAATTAACTATAGTGTACCAATATTTTTTGAATATTGCAGTTACTACAACAAATCAAGCAATTAAGGCATTAGAGATGTTGAGAGAGAACAAGAATCAATTTGATTTGGTGATCAGTGATGTGCATATGCCCGATATGGATGGATTCAAACTTTTGGAGCTTGTGGGTCTCGAAATGGATCTCCCTGTCATTAGTATGTTTTTAATATGTTTGTTGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265716.1	6.9e-38	two-component response regulator ORR22-like
Swissprot	B8B3I4.1	1.1e-37	Two-component response regulator ORR22
trEMBL	A0A5P1EWG4	5.0e-38	Two-component response regulator

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G25180.1	87.06	9e-41	161	ARR12;RR12	response regulator 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g338175	AT2G25180.1	85	11	8	92	11	95	87.06	9e-41	161
g338175	AT4G31920.1	85	14	8	92	11	95	83.53	2e-39	156
g338175	AT4G16110.1	85	25	8	92	22	106	70.59	2e-31	130

Ortholog group

Species	Genes
Allium cepa	g136838.t1; g338175.t1; g486177.t1
Allium fistulosum	AfisC2G09615; AfisC5G05714
Allium sativum	Asa0G03192.1; Asa0G04793.1; Asa2G00056.1; Asa3G01992.1; Asa3G01993.1; Asa5G01050.1; Asa7G03386.1
Arabidopsis thaliana	AT2G25180.1; AT4G31920.1
Oryza sativa	LOC_Os02g08500.1; LOC_Os02g55320.1; LOC_Os06g08440.1; LOC_Os10g32600.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00072.21	Response_reg	Domain	16	90	54.0	1.4e-14

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009735	P	response to cytokinin
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032870	P	cellular response to hormone stimulus
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071368	P	cellular response to cytokinin stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14491	ARR-B; two-component response regulator ARR-B family	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network