result

Gene information

Detail information of g339215

Location

Gene	Chr	Start	End	Strand
g339215	CHR5	20665750	20668077	+

Sequences

CDS

>g339215.t1
ATGCCTAAACAAGAGGTGTATATTCCCGATGATGTAGTGACAAACATATTAAATCGACTTCCATCTACCTCCATCTTAGGATTCCAAACTGTTTCCAAATATTGGTGCTACGCTATTTGTTCAAATATCTTAAAAGCACGTTCCAAAAGTTCATTGATGAGCGTTCAATTTACCAACGTAGCTTTCAATGAACTTACACTTTTCAATTTCGATGATGAGGGCAAAACTATTAGAAACGTTTGCGAAATTGATCTTGGAGGCACCGTGAACTATAGATTTTCCAACATGGTTAATGGATTAGTTTGTGCTTATGGAGACGAAACTGCCACTAGCTTCTACTTGATCAATCTCACCACATTTGAAACGTCAAAGTACCCGAGTAGAAAGATAAAGGACACTGCTTATTATGACAAGGTTATTTTAGGATTTAATCCATCCACAGGCTTGTACAAATTCATTAGAATCTATTCTCTCTTCGGTAATTATGGCTCCTACCATTGTGAGATTCTTGAAAACAGTGCTTCATTCGAACATGAATGGAAAACCATAGGAGTAGTTCCTCTTATGGTTAATATTGATAACCCAGTCTACTTAGATGGAGCTATTCACTGGATGATGAAACCTCGATCATCGTATAAACGTAAGCCACTTGCTTTTGATATTCTGAAACTTGATATGGCGAAAGAGAGGTTTGAAATGATAGCTCCTATTCTTGAGAATGAATTTGACGACTGCGATTGTCAAATCTGCGACTTCACTTTGAGTGGGGAAAAGGGTAAGCTTTATGTACTGCATTACTGCCCTGAGAGGAAATGTTTGGAAGGATGGAGATTGAAGGAAAGCAAAAGAGATCGTGTTTGGAATAGTTTGTTTCATGTAAATTTTGCATCGATGATTGACAAGGAAGGAGGTGGTTTAATTGGTAATGATGAACATCCATCTTTGGTTGCTACTGATATTGTAGATGATAAGGTCTTGATACGAAGCAAAAGGTTCAATGAAGGGGTTTGTATTTGGCATGATAAAGGGGTTTACATTTATGATTTGGTTCATAAGAAACTTACTGAATGTTGGAATGTTTATAGTGGGAGTTTTAGCTTGAAGCATGGCTGGAGACGAATCCTTTTTCACCGTAGCGATTCATCATTACAAGTTGCCATTACAAGCTCCATAAGCTCTTCAAAATTCAAAACTCTTAACGTAAAAATACAAATACTTCATGTTCATCATAGATGTGATGCACAACATTTAAAAAAAGAATACATCTTCCAAACACACTAG

Protein

Gene

>g339215.t1
ATGCCTAAACAAGAGGTATGTTGGTTTTTATTTGCTTATAGATAACCTTTAATCCAGATATATTGTTTTCTTAAATATTTTGTTAAACTGGACATCATTCATAAGCTCCGGAAGAATTATGCATTGTAATCACAGCATGATATACTTGTTTTGGGGATATGAAACTTGCACGACTTATGGACATCTTAGTTGTTTAACTTTAGTTGTTTAACTTGATGATTGACTATTATGTGCAGGTGTATATTCCCGATGATGTAGTGACAAACATATTAAATCGACTTCCATCTACCTCCATCTTAGGATTCCAAACTGTTTCCAAATATTGGTGCTACGCTATTTGTTCAAATATCTTAAAAGCACGTTCCAAAAGTTCATTGATGAGCGTTCAATTTACCAACGTAGCTTTCAATGAACTTACACTTTTCAATTTCGATGATGAGGGCAAAACTATTAGAAACGTTTGCGAAATTGATCTTGGAGGCACCGTGAACTATAGATTTTCCAACATGGTTAATGGATTAGTTTGTGCTTATGGAGACGAAACTGCCACTAGCTTCTACTTGATCAATCTCACCACATTTGAAACGTCAAAGTACCCGAGTAGAAAGATAAAGGACACTGCTTATTATGACAAGGTTATTTTAGGATTTAATCCATCCACAGGCTTGTACAAATTCATTAGAATCTATTCTCTCTTCGGTAATTATGGCTCCTACCATTGTGAGATTCTTGAAAACAGTGCTTCATTCGAACATGAATGGAAAACCATAGGAGTAGTTCCTCTTATGGTTAATATTGATAACCCAGTCTACTTAGATGGAGCTATTCACTGGATGATGAAACCTCGATCATCGTATAAACGTAAGCCACTTGCTTTTGATATTCTGAAACTTGATATGGCGAAAGAGAGGTTTGAAATGATAGCTCCTATTCTTGAGAATGAATTTGACGACTGCGATTGTCAAATCTGCGACTTCACTTTGAGTGGGGAAAAGGGTAAGCTTTATGTACTGCATTACTGCCCTGAGAGGAAATGTTTGGAAGGATGGAGATTGAAGGAAAGCAAAAGAGATCGTGTTTGGAATAGTTTGTTTCATGTAAATTTTGCATCGATGATTGACAAGGAAGGAGGTGGTTTAATTGGTAATGATGAACATCCATCTTTGGTTGCTACTGATATTGTAGATGATAAGGTCTTGATACGAAGCAAAAGGTTCAATGAAGGGGTTTGTATTTGGCATGATAAAGGGGTTTACATTTATGATTTGGTTCATAAGAAACTTACTGAATGTTGGAATGTTTATAGTGGGAGTTTTAGCTTGAAGCATGGCTGGAGACGAATCCTTTTTCACCGTAGCGAGTAATGCTTTATCTTATGTACATTTTAACTTAGTAGTAGCAGTTCACATTTTGCTGTTTGCAGTTGTTTCTTGCAGTACATGGCAAAGATTGTGCAGTTTTTAGATGCTTTTTGGTGCTGAAACAGTTTGAATGTTTTGGTCTTAGTAGTTGGGCTTTGTGAGTCAATGTTTTATATATAATTATGTTCATATTAGTAAGTTTATATCTCTCTTTTTTCCAGTAATAAAGACAGCATTTGTGCTTTAAAACGTATTATATAAGGGCTTTGCTCATAAAATTCTTATTTCTGTTGCTTACGCCATATGTTTCGCGTACCTCTCAACTTTTCAAATTTTTTTTTTAACATTTTTGTCTTTTTCTTTTTATTACTGATGATATCTCAGTATGACATGTTTGTTTCATCAACATAAGACAAACACAAAAGGATATTATGTTTATCATCGTCATTTGTGGAAGATGAATATATTAACAAATACTGAATAATGTTGCATACTTTGCAAAGAAAACAGAAAATAAACTGTTCAACATCAGACTGGATAGAAAATCTAACCATAGAACCATAGCTAGGTAACACTTTTATTTCATACACTAATCGTATTTGGTTCCAAGTTCCAATTAACTCAACAAATAATTTGAAAAACAAACCTTCAGCGTAAATGATGCAATATAAAATTTTGAGAGTGATAACTAATCTATCTCATCCAGTTTTTTTTAAGTTAAAAGCTTTCTTTTTCGCAATCACACAGCCTTACGTATCACAAAAGACAAAACATCTGAAGATTACCAAACAAAACGTAAAGTTTCATATCACCACATTCATGAAGTTCATCATTACAAGTTGCCATTACAAGCTCCATAAGCTCTTCAAAATTCAAAACTCTTAACGTAAAAATACAAATACTTCATGTTCATCATAGATGTGATGCACAACATTTAAAAAAAGAATACATCTTCCAAACACACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262302.1	5.1e-13	F-box/kelch-repeat protein At3g23880-like
Swissprot	Q9ZPS1.1	3.8e-05	Putative F-box protein At2g02030
trEMBL	A0A2H5PLF7	8.5e-10	F-box domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G33530.1	25.30	4e-09	59.3		F-box family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g339215	AT1G33530.1	253	154	9	6	246	95	324	25.30	4e-09	59.3
g339215	AT1G11270.2	265	140	13	5	238	32	272	26.42	5e-08	55.8
g339215	AT1G11270.1	265	140	13	5	238	32	272	26.42	5e-08	55.8

Ortholog group

Species	Genes
Allium cepa	g221943.t1; g28300.t1; g305880.t1; g310930.t1; g339215.t1; g42107.t1; g421663.t1; g447305.t1; g467029.t1; g8069.t1; g8075.t1; g89566.t1
Allium fistulosum	AfisC2G05979; AfisC4G06983; AfisC5G00048; AfisC5G00854; AfisC5G06479; AfisC5G06481; AfisC5G06485; AfisC5G06486; AfisC5G06491; AfisC5G06495; AfisC5G06497; AfisC5G06503; AfisC5G06511; AfisC5G06512; AfisC7G00910; AfisC7G00918
Allium sativum	Asa0G00181.1; Asa0G01752.1; Asa4G00028.1; Asa4G04134.1; Asa4G04984.1; Asa4G04987.1; Asa4G04990.1; Asa4G05007.1; Asa6G06258.1; Asa6G06296.1; Asa6G06371.1; Asa6G06638.1; Asa7G04096.1; Asa7G04097.1; Asa7G04275.1; Asa7G04276.1; Asa7G04277.1; Asa7G04278.1; Asa7G04279.1
Arabidopsis thaliana	AT3G25550.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00646.30	F-box	Domain	9	45	21.6	0.00013

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network